Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3106 ATGATGATGGAGTCGAAGGCTCTGCGGTTCATAACCCACCAATCAATCTTCTCCACCGTTCGATCTGGGGACCTTGATGGGCTTAAGAAACTGGTGGAGCAGCTAAATAAGGACGAGTCTTGTTCATCTTCAGATGGGTCATCATCATCGTCATCATCGCTCTCTGATGTGATGTCCCTTCAGAACGATGCTGGTGAGACAGTGCTTTACATCGCAGCAGACCGTAATCTGAAGGAGGTGTTCAGCTTCTTGCTTAAGCTCTCTGACTTTGAGGTCGTCAAGATCAGGTCCAAGTCTGACATGAACGCCTTTCATGTAGCAGCTAAGCGTGGCCATCTCGATATTGTGAGGGAGCTTTTGAGTACTTGGCCTGAGGTTTGTAAGTTATGCGACTCCTCAAACACTAGCCCTCTATATTCCGCTGCTGTTCAAGACCATCTGGATGTGGTCAATGCTATCATGGATGTTGATGTCAGTTCCATGATGATAGTGAGGAAAAACGGGAAAACTTCATTGCACAATGCTGCTAGGTACGGCGTCCTTCGTATTGTCAAAGCACTTATTGCCCGGGATCCAGGAATAGTTTGCATCAAAGACAAAAAAGGTCAAACTGCTCTGCACATGGCTGTCAAAGGACAGAGTACTTGTGTGGTGGAGGAGATATTAGTTGCTGATCCAGCTATACTGAATGAACGGGACAAGAAAGGGAATACAGCTCTTCACATGGCCACGAGGAAAGGCCGTGCACAGATAGTGAGTCTTTTGCTAAGCTATACAGCTATGGATGTCAATGCCATCAATAAGCTACAGGAAACAGCCCTGGATTTGGCAGATAAACTGCCGTATGGAGACTCAGCTTTTGAAATTAAGGAAGCCCTTGCAGAATTTGGTGCTAAGTATGCCAGGAATGTCGGTAGAATAGATGAAGCCATGGAACTTAAAAGAACTGTTAGTGATATAAAACATGAGGTGCAGTCACAACTTATACAAAATGAAAAAACTCGTAGACGAGTTTCTGGTATTGCTAAGGAATTGAAGAAACTTCATCGAGAAGCTGTTCAAAACACCATCAATTCTGTCACCCTCATTGCTGTCCTTTTTGCTTCAATAGCATTCTTGGCTATATTCAATTTGCCTGGTCAATATAAAGTGGAAGGACCAGAGACAGGGAAGGCTAATATAGCCAATCATGTTGGTTTCCAAGTTTTCTGCCTTTTGAATTCCACGTCTCTTTTCATTTCACTTGCAGTTGTCGTAGTTCAAATCACCTTGGTAGCCTGGGACACGAGGGCTCAAAGGCAGATTGTGTCAGTGGTTAACAAGCTAATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTAGCAATAGCTTTTGAGGTGGTTGGAGGGCAGAGGTGGATGGCTCTTACCATCACCATTTTGGGAGTACCAATCCTAGTTGGGACTCTAGCATGGTTGTGCTACTTTGTTTTCAGACAACATTTTGGTATTTTCCGCAGTGATTCCCAGAGACGCATCAACAGGGCAAGCGGAAGCAAGTCTTTTTCATGGTCTTACTCTGCAAATATATCAGATTTGGAAGAATATAATTCTGACATTGAGAAGATCTATGCTCTGTGA 1623 0.4424 MMMESKALRFITHQSIFSTVRSGDLDGLKKLVEQLNKDESCSSSDGSSSSSSSLSDVMSLQNDAGETVLYIAADRNLKEVFSFLLKLSDFEVVKIRSKSDMNAFHVAAKRGHLDIVRELLSTWPEVCKLCDSSNTSPLYSAAVQDHLDVVNAIMDVDVSSMMIVRKNGKTSLHNAARYGVLRIVKALIARDPGIVCIKDKKGQTALHMAVKGQSTCVVEEILVADPAILNERDKKGNTALHMATRKGRAQIVSLLLSYTAMDVNAINKLQETALDLADKLPYGDSAFEIKEALAEFGAKYARNVGRIDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTLIAVLFASIAFLAIFNLPGQYKVEGPETGKANIANHVGFQVFCLLNSTSLFISLAVVVVQITLVAWDTRAQRQIVSVVNKLMWAACACTCGAFLAIAFEVVGGQRWMALTITILGVPILVGTLAWLCYFVFRQHFGIFRSDSQRRINRASGSKSFSWSYSANISDLEEYNSDIEKIYAL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3106 540 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 4 540 - -
Dod04g3106 540 ProSiteProfiles Ankyrin repeat region circular profile. 235 260 - -
Dod04g3106 540 Coils Coil 331 351 - -
Dod04g3106 540 ProSiteProfiles Ankyrin repeat profile. 201 234 IPR002110 GO:0005515
Dod04g3106 540 Pfam Domain of unknown function 351 458 IPR026961 -
Dod04g3106 540 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 4 540 - -
Dod04g3106 540 SUPERFAMILY Ankyrin repeat 16 282 IPR036770 -
Dod04g3106 540 Gene3D - 157 316 IPR036770 -
Dod04g3106 540 ProSiteProfiles Ankyrin repeat profile. 167 188 IPR002110 GO:0005515
Dod04g3106 540 Pfam Ankyrin repeats (3 copies) 99 155 IPR002110 GO:0005515
Dod04g3106 540 Pfam Ankyrin repeats (3 copies) 199 265 IPR002110 GO:0005515
Dod04g3106 540 ProSiteProfiles Ankyrin repeat region circular profile. 167 188 - -
Dod04g3106 540 Gene3D - 2 156 IPR036770 -
Dod04g3106 540 SMART ANK_2a 99 128 IPR002110 GO:0005515
Dod04g3106 540 SMART ANK_2a 235 265 IPR002110 GO:0005515
Dod04g3106 540 SMART ANK_2a 64 92 IPR002110 GO:0005515
Dod04g3106 540 SMART ANK_2a 167 196 IPR002110 GO:0005515
Dod04g3106 540 SMART ANK_2a 133 163 IPR002110 GO:0005515
Dod04g3106 540 SMART ANK_2a 201 231 IPR002110 GO:0005515
Dod04g3106 540 ProSiteProfiles Ankyrin repeat profile. 235 260 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3106 Dod-Chr4 54745516 54749359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3106 3 540 Miscellaneous Gene Families AT2G01680 70.055 0.0 749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3106 04 54745516 54749359 Dod04g3106 04 54745516 54749359 ECH