Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3092 ATGGACGACGTTAAAGATAAGGTAAAGGGTTTCATGAAGAAAGTCAACAACCCTTTCTCTTCCTCCTCCTCCTCGTCTGGCAAATTCAAGGGCCAAGGTCGAGTCTTGGGATCTTCTCCTTCTCCTTCTCCTTCATTATCTTCTTCTTCTTCTTCTTCGTCTACCCCAGGTTGTAATTCCAATCCTACCCCTCGCCCCATCCCAATGCAGCAGAACCTTAATTCCAAACCCACTTCATCTTCAACCTATCCTAGGCAACCCTTACCCCAGAAGACCACGAATTCCGACCAAAACAGAACCGACAGGGATCGCAAACCGGGAACAGCTGGGTTTGACCCTTTTGATTCTCTGGTCACCTCGTCCAAGAGATCTCAAAATGGCTATTCACTCAACGTGTTCGAATGCCCTGTTTGTGGGAAATCGTTTAGATCCGAAGATGAGGTCTCTGAACACGTGGATACTTGTTTGAGTAATGGTGGCAATTCAGTTGAGCGTGATGATGGAATTGGAAATGGAAATGATGGTGTCGTCTCGGAATTGCAAGAGAGTGGAGTTGAGTCTTATAATGGTGAGTTGGAGGTTTGTGTTGGCACTTACGTTTCTGGGAATCCATCTGAGGGATCAGTTGATGTTGTTCTCAAGCTGTTGAGGAATGTTGTTAGGGAACCTGAGAACGCCAAGTTTAGGAAGATCAGGATGAGCAATCCAAAGATCAAGGAGGCTGTTGCTGATGCTACTGGAGGAGTTGAGTTGCTCAGCTTTGTTAGCTTTGAACTGAGGGAGGAGAATGGGGAGACATGGGCAGTCATGGGGGTTCCTTCAGAGGAGCAGATAAGATTGATCAAGAAAGCAATAATGTTTCTGGAATCACAACTGGTGCAGCAAGAACCTCCAAAGAGTGAGGCTTTGGCTCCTGCCACTTGTGCTGAGTCAGATACAAAGGCTGAACCAAAGCCTGTCGACAGACAGGTGAAAGTCTTCTTTGCTGTTCCTGAAAATGTTGCAGCTAAAATTGAGCTACCGGATTCCTTCTATAAGCTTTCAGTTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAGGAGTCTCAGCTTTTAATCCCGAAGTCGCTAAAAGACAAGCAAGCAAAAGCTGCCAGGAAGAGATACTCTAAAACTATTATTAGGATTCAATTTCCAGATGGAGTTGTGCTTCAGGGTGTATTTTCTCCATGGGAGCGGACTACTGCCCTCTATGAGTTTGTGAGCTCGGCATTAAAAGAGCCGAGCTTGGAGTTTGAGCTAATCCATCCCGTACCGATCCAACGGCGGGCGATCCCTCGTATTGCTAAAGCAGGGCAGAATGCCAAAACGTTGGAGGATGAGGACCTCGTACCTTCAGCTCTAATCAAGTTCAAGCCACTCGAAACAGATTCTGTTGTATTCACCGGTCTCAAAAACGAATTGCTTGAAATCAGTGAACCACTCGTAAATGCTTAA 1488 0.4583 MDDVKDKVKGFMKKVNNPFSSSSSSSGKFKGQGRVLGSSPSPSPSLSSSSSSSSTPGCNSNPTPRPIPMQQNLNSKPTSSSTYPRQPLPQKTTNSDQNRTDRDRKPGTAGFDPFDSLVTSSKRSQNGYSLNVFECPVCGKSFRSEDEVSEHVDTCLSNGGNSVERDDGIGNGNDGVVSELQESGVESYNGELEVCVGTYVSGNPSEGSVDVVLKLLRNVVREPENAKFRKIRMSNPKIKEAVADATGGVELLSFVSFELREENGETWAVMGVPSEEQIRLIKKAIMFLESQLVQQEPPKSEALAPATCAESDTKAEPKPVDRQVKVFFAVPENVAAKIELPDSFYKLSVEEVRREAELRRKKIEESQLLIPKSLKDKQAKAARKRYSKTIIRIQFPDGVVLQGVFSPWERTTALYEFVSSALKEPSLEFELIHPVPIQRRAIPRIAKAGQNAKTLEDEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3092 495 Pfam PUB domain 206 281 IPR018997 -
Dod04g3092 495 SUPERFAMILY Ubiquitin-like 355 468 IPR029071 -
Dod04g3092 495 MobiDBLite consensus disorder prediction 1 121 - -
Dod04g3092 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 162 IPR013087 -
Dod04g3092 495 SMART c2hc_5 132 156 IPR006642 GO:0003677|GO:0006281
Dod04g3092 495 SUPERFAMILY PUG domain-like 204 290 IPR036339 -
Dod04g3092 495 SMART ubx_3 380 470 IPR001012 GO:0005515
Dod04g3092 495 MobiDBLite consensus disorder prediction 15 95 - -
Dod04g3092 495 ProSiteProfiles UBX domain profile. 384 468 IPR001012 GO:0005515
Dod04g3092 495 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 494 - -
Dod04g3092 495 SMART PGNneu 207 274 - -
Dod04g3092 495 CDD UBX_UBXN6 389 469 - -
Dod04g3092 495 Gene3D Classic Zinc Finger 129 159 - -
Dod04g3092 495 Pfam UBX domain 384 438 IPR001012 GO:0005515
Dod04g3092 495 CDD PUB 205 290 - -
Dod04g3092 495 Gene3D - 202 288 - -
Dod04g3092 495 Gene3D - 378 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3092 Dod-Chr4 54628055 54632026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3092 1 416 C2H2 Transcription Factor Family AT2G01650 54.137 1.48e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g3092 UBX 8.6e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3092 04 54628055 54632026 Dod04g3092 04 54628055 54632026 ECH