Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3091 ATGGAGAGAGATTTCATGGGTCTAACCTCAAAGGAGCCACTAGCTGTGGTCAAGGAGGAGATCAACGATGATTCCTGCACCAAAGAGCCTGGCTTCACGAAGGCTCAATGGCTTTTCTCCACCAAAGTCTCTGCTGTTCCACACTTGATGTCTTTCAAGGTTTCTCAAGATGACAAGACTAGAAAGCTAGGTTCAGATTCCATCACACCTTCTGGTTTTATGACCCCAGATGCATTTGACTCCACTCAAAAACGCTCTGCTGCTGAACCTCAGAAATCTTTCAATCAAGATGGACAAGGTGGCTTTCATTTTTCCCTCCCTCTGTATCCTGTACAACATGATGTGAATTCTGTGAATCGTCCTCATGATGTGAAGAAGATTTCTGTTTCCAACCAAGCAATTTCAGTTTCCACGGGGAATCCATTCCTGAAGAATAATTTTGCAACTGCTGGTCAGATCATAAATGGTGCTAATGTGAAGCAGCCATTACTTGGGGGAATACCTGTTACAGCACCTCATCCTGTCCTTCCAACCATCAGTACTGTTGCTGGAATGCCTGATTCATGCGGCACAAAACCATCCGCACCTTCTGCTCAACTTACCATCTTCTATGCGGGTACTGTTAATGTCTTCGAAGATATCTCTGCCGAGAAGGCACAAGCTATTATGCTGTTGGCTGGCAATGGCATATCTGCTGCTGCTAATGTTCCACAGCCAAAAGTTCAGGCACCAGGCTCGAAGTTGGCAGCCAATGATGGTATGCCTGTGAGTCAACCTGCTAATACAACACCCTGCTCTGGTCTTCCAAGTCCTTTATCTGTTTCATCACATACTGGTGCACAGTCCGGGAGTGGCTCAACTAGTACCGATGAATTTCTGATGGCTAAAACTACTGGTGTTCCCACCACTCCTGTTAGCAATGCGGAGCCTCCAAAAGTGGTCCATGCAACAGCTATGTTGAGTTCAGCTGTGCCACAGGCTCGCAAAGCATCCTTGGCTCGATTTTTAGAGAAGCGCAAGGAAAGGGTGATGAATGCAGCACCATATAACCTCAACAAGAAATCTGAAGAGTGTGCCACTGCAGAATACAATGGTGCTAACTTCTCAGTTAGCACTGCCACCACCAATGCTCTATCAGTCAAGCAAGGATAG 1152 0.4635 MERDFMGLTSKEPLAVVKEEINDDSCTKEPGFTKAQWLFSTKVSAVPHLMSFKVSQDDKTRKLGSDSITPSGFMTPDAFDSTQKRSAAEPQKSFNQDGQGGFHFSLPLYPVQHDVNSVNRPHDVKKISVSNQAISVSTGNPFLKNNFATAGQIINGANVKQPLLGGIPVTAPHPVLPTISTVAGMPDSCGTKPSAPSAQLTIFYAGTVNVFEDISAEKAQAIMLLAGNGISAAANVPQPKVQAPGSKLAANDGMPVSQPANTTPCSGLPSPLSVSSHTGAQSGSGSTSTDEFLMAKTTGVPTTPVSNAEPPKVVHATAMLSSAVPQARKASLARFLEKRKERVMNAAPYNLNKKSEECATAEYNGANFSVSTATTNALSVKQG* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3091 383 PANTHER PROTEIN TIFY 7 13 372 - -
Dod04g3091 383 Pfam tify domain 195 227 IPR010399 -
Dod04g3091 383 SMART tify_2 193 228 IPR010399 -
Dod04g3091 383 Pfam Jas motif 325 349 IPR018467 -
Dod04g3091 383 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 372 IPR040390 -
Dod04g3091 383 ProSiteProfiles Tify domain profile. 193 228 IPR010399 -
Dod04g3091 383 MobiDBLite consensus disorder prediction 255 289 - -
Dod04g3091 383 MobiDBLite consensus disorder prediction 65 96 - -
Dod04g3091 383 MobiDBLite consensus disorder prediction 240 289 - -
Dod04g3091 383 MobiDBLite consensus disorder prediction 60 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3091 Dod-Chr4 54614203 54617750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3091 37 358 Tify Gene Family AT3G17860 36.471 1.02e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Dod04g3091 tify 4.8e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3091 04 54614203 54617750 Dod04g3091 04 54614203 54617750 ECH