Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0202 ATGGTATTGTCTTGGACCAAAAGAAACATTTTCCGCCGTGGCCGCAAGGGGACAAAGGAACAAGCTCCGAACGGTGCCGATTTAGAGGTTGATGAGCTCATGATCCCCGCTCACTTCCGGTGCCCCGTAAGTCTTGACTTGATGAAAGACCCTGTGACTCTCTCCACAGGCATCACCTACGACAGGGAAAGCATCGAGAAATGGATCGAAGCAGGGAACAAAACGTGCCCCGTCACTAACCTCGTCCTAACAACCTTCGACATCATCCCAAACCACGCCATCAGGAGAATGATCCAGGATTGGTGCGTCGAGAACACCTCCTACGGGATCCAGAGGATCCCAACTCCCAGAGTCCCTTTGTCCAGGTACGAGGTTTCTGAGACGTGTTCGAGGTTGTTGTCTGCTTCTCAGAATCTAGATGACGCCGCGTGTCGGGATTTCGTTCGGAAGATCAAGGCTTGGGGGAGGGAGAGTGAGAGGAACAAGAGGTGTATTGTTGAGAACGGTGCTGGTGATGTTCTATCACGTGCCTTTGATTATTTCTCACGTGACTCAGTTGAGAGGCACGTGGCTTCATTGGGTGAGATCTTGCAGATTCTAACATGGATGGTTCCGGTTGGTGAGGAGGGTCAAGTGAATTTGGGTTCAGAAGCTTCTTTGCGTGCATTGGTTTGGTTCTTAAGTGGGAATGACCTTGGAGCAAGGCAATGTGCGGCTTTGTTGCTCAAAGAAGTGAGTGTTGAGTCGTTGGAGAGAAATAAAACCGAAGGACTAATTGAGGCTTTGGTTAAGATGATTAGGGAGCCTGTTGGGCCTACTTCTACGAAAGCATGTTTGGTCACAATTTTCAATATGGTCTCACTAGGAGAGAATAGAGAGGCAATTGGTGAAAAATTTGTGGAATTGGGCTTGGTTTCGATGCTGTTAGAGGCTGTTGTTGATGCCGAGAGAGGGATGTGTGAGCAGGCATTTGGGGTGTTGGATTGCATTTTTGAATTCCAAAAGGGGAAGGAGGTTGCTAAGGGGAATGCTCTAATAGTGCCTCTTGCAATTAAGAAGATTTTGAGGGTGTCCCAATTGGCTTCTAGCTTTGCGGTCTCTATTCTTTGGAAGATTTGTGAGAAGAATGATGAAGGGGTCTTGATTGAGGCACTTCAAGTGGGGGCTTTTCAGAAACTATTGGTTGTGTTGCAGGTTGGTTGTGATGATATCACAAAGGAGAAGGCTACCGGGTTGTTGAAACTGTTGAATGGTTACAGGAGTAAAGCAGAGTGCTTTGATTCATCATTGGATTTCAAGTACCTTAAGAAGCCATTCTAA 1320 0.4727 MVLSWTKRNIFRRGRKGTKEQAPNGADLEVDELMIPAHFRCPVSLDLMKDPVTLSTGITYDRESIEKWIEAGNKTCPVTNLVLTTFDIIPNHAIRRMIQDWCVENTSYGIQRIPTPRVPLSRYEVSETCSRLLSASQNLDDAACRDFVRKIKAWGRESERNKRCIVENGAGDVLSRAFDYFSRDSVERHVASLGEILQILTWMVPVGEEGQVNLGSEASLRALVWFLSGNDLGARQCAALLLKEVSVESLERNKTEGLIEALVKMIREPVGPTSTKACLVTIFNMVSLGENREAIGEKFVELGLVSMLLEAVVDAERGMCEQAFGVLDCIFEFQKGKEVAKGNALIVPLAIKKILRVSQLASSFAVSILWKICEKNDEGVLIEALQVGAFQKLLVVLQVGCDDITKEKATGLLKLLNGYRSKAECFDSSLDFKYLKKPF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0202 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 112 IPR013083 -
Dod04g0202 439 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Dod04g0202 439 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Dod04g0202 439 Pfam U-box domain 35 105 IPR003613 GO:0004842|GO:0016567
Dod04g0202 439 PANTHER WDSAM1 PROTEIN 19 439 IPR045185 GO:0061630
Dod04g0202 439 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 19 439 - -
Dod04g0202 439 Gene3D - 122 428 IPR011989 -
Dod04g0202 439 SUPERFAMILY ARM repeat 205 424 IPR016024 -
Dod04g0202 439 CDD RING-Ubox_PUB 39 80 IPR045210 -
Dod04g0202 439 SUPERFAMILY RING/U-box 28 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0202 Dod-Chr4 2506303 2508130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0202 32 439 U-box Gene Family AT5G37490 49.398 6.66e-127 372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0202 04 2506303 2508130 Dod04g0202 04 2506303 2508130 ECH
Dod04g0202 04 2506303 2508130 Dod08g0855 08 10328067 10330303 PCT