LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g0201	ATGCTCAGCAACAACGGTTTCACAACCGTTCCCAACGACTTCTTCAACGGAATGCCTCAGCTTCAAACCGTTGAGATCGACAACAACCCTTTCCAGCCCTGGGAGATCCCTCAGTCTCTCCGAAACGCTTCATCGCTTAAGAACTTCTCAGCCAACAACGCTAATATTGTCGGAAAAATCCCTGATTTTTTCACCCCCGATGTTTTCGCCGGGTTGGAGCATTTGCATTTGGCGCTGAATGGGATCGAGGGTGTTTTGCCGTTGGGGTTTTCTGCGCTTCAGGTTCAGACCCTGTGGCTGAATGGGCAAAAGGGTGATTCGAAGCTTGGTGGGGATGTTGGTGTCTTGCAGAATATGACTTCTTTGACGCAGGTTTGGTTGCATTCGAACGCGTTTTCTGGGGCTTTGCCTGATTTTTCTGGGTTGGTGAATTTGCAGGATTTGAGCTTGAGGGATAACTCTTTTACTGGTCCTGTTCCTGGTGCTTTGGTGAGTCTAAAGTCGCTGAAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCTGTACCTGTGTTTGGTTCTGGGGTTGTTGTTGATATGAGTGAGGGTTCCAATAGTTTTTGTTTGCCTGGTCCTGGTGATTGTGATCCAAGAGTGAAGGTTCTGCTTTCTGTTGTGAAGTCTTTGGGGTATCCCAAAAGGTTTGCTGAGAATTGGAAGGGGAATGATCCTTGTAATGATTGGATTGGGATAGGTTGTAGTAATGGGAACATTACTGTTGTCAATTTTCAGAAGATGGGCCTTACTGGGACTATATCGCCGGAGTTTGGCTCGATCAAGTCGCTGCAGAGGCTGGTGCTTGCTGATAATAACCTCACTGGTTCAATCCCTGAGGACCTTGCTGGCTTGCCTGTTCTTACTGAACTGAATGTTGCAAACAATCAGCTTTATGGGAAGGTACCCAGTTTGAAGAGCAATGTAGTTGTTAAGACCGATGGTAACAAGGATATAGGGAAGGATAAGCCCAGCCCATCCCCTCCAGGTTCATTGTCTCCGAACTCGACACCTCCAAATGCAATGGATGGAAATGGTGGCAAAAAATCTTCCCATGTAGGAGTAATTGTGTTTGCTGTGGTTGGGGGTGCAGTGTTGGTTCTTGTGATTGGCTTATTGGTTTTCTGCTTGCTTAGGGTGAAGCGAAAACAGCTGAGCAGGGTGCAGAGCCCGTGTGAACAAGTTGTCCACCCTCATCATTCCGGATCAGAAAATGAAAGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTACTGTTAGTGAATCCCAAACTGTGCCAAGCAGGGAGGGAGGGGATATCCAGATGGTTGAAGCAGGAAACATGGTCATTTCAATACAAGTCCTGAGGAATGTCACTGACAATTTCTGCGAGCAAAATATATTGGGGCAAGGAGGATTTGGAACAGTCTATAAAGGTGAATTGCATGATGGTACAAAAATTGCAGTGAAAAGAATGGAGTCTGGGGCAATATCTGGGAAGGGGACAGCAGAATTTAAGTCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGACATCTTGTTTCCCTTCTCGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTATATGCCTCAGGGGACGTTAAGTAAGCATCTTTTTAACTGGCAAGAAGAAGGACTGAAGCCACTGGAGTGGAATAAAAGACTGACCATTGCCTTAGATGTGGCAAGGGCTGTTGAGTATCTTCATAGCTTGGCCCATCAAAGCTTTATACATAGGGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGGGCGAAAGTTGCAGATTTTGGTCTTGTTCGTCTTGCTCCAGAAGGAAAAGCTTCAATAGAAACAAGAATTGCAGGAACTTTTGGATATCTGGCACCAGAATATGCAGTTACTGGTCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGTGTAATATTGATGGAGCTGATAACTGGAAGAAGAGCACTTGATGAGACTCAGCCTGAGGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTACATAAACAAGGACTCATCCCGCAAGGCCATTGACCCCACAATCGAGCTCAACGAGGAAACGATTGCTAGTATTCACACCGTAGCAGAGCTAGCTGGCCACTGCTGTGCAAGGGAGCCATATCAAAGGCCAGACATGGGTCATGCTGTAAATGTACTTGCTTCTCTTGTAGAACTTTGGAAACCATCTGATCAGAATTCTGAAGATATATATGGAATTGACCTTGACATGTCTTTACCACAAGCACTAAAAAAGTGGCAGGCTTATGAAGGTAGAAGCGAAATGGAGTCATCTTCATCATCGCTCCTTCCAAGCTTGGATAACACACAGACAAGCATACCTACCCGTCCATATGGATTCGCTGAATCGTTCACATCTGCAGATGGCAGGTGA	2475	0.4549	MLSNNGFTTVPNDFFNGMPQLQTVEIDNNPFQPWEIPQSLRNASSLKNFSANNANIVGKIPDFFTPDVFAGLEHLHLALNGIEGVLPLGFSALQVQTLWLNGQKGDSKLGGDVGVLQNMTSLTQVWLHSNAFSGALPDFSGLVNLQDLSLRDNSFTGPVPGALVSLKSLKVVNLTNNLFQGPVPVFGSGVVVDMSEGSNSFCLPGPGDCDPRVKVLLSVVKSLGYPKRFAENWKGNDPCNDWIGIGCSNGNITVVNFQKMGLTGTISPEFGSIKSLQRLVLADNNLTGSIPEDLAGLPVLTELNVANNQLYGKVPSLKSNVVVKTDGNKDIGKDKPSPSPPGSLSPNSTPPNAMDGNGGKKSSHVGVIVFAVVGGAVLVLVIGLLVFCLLRVKRKQLSRVQSPCEQVVHPHHSGSENESVKITVAGSSVSVGGTVSESQTVPSREGGDIQMVEAGNMVISIQVLRNVTDNFCEQNILGQGGFGTVYKGELHDGTKIAVKRMESGAISGKGTAEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFNWQEEGLKPLEWNKRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRRALDETQPEDSMHLVTWFRRMYINKDSSRKAIDPTIELNEETIASIHTVAELAGHCCAREPYQRPDMGHAVNVLASLVELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRSEMESSSSSLLPSLDNTQTSIPTRPYGFAESFTSADGR*	825

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g0201	824	SUPERFAMILY	Protein kinase-like (PK-like)	449	755	IPR011009	-
	Dod04g0201	824	MobiDBLite	consensus disorder prediction	326	358	-	-
	Dod04g0201	824	Pfam	Leucine rich repeat N-terminal domain	214	248	IPR013210	-
	Dod04g0201	824	SMART	serkin_6	471	751	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod04g0201	824	Gene3D	Ribonuclease Inhibitor	211	335	IPR032675	-
	Dod04g0201	824	CDD	STKc_IRAK	477	747	-	-
	Dod04g0201	824	Gene3D	Phosphorylase Kinase; domain 1	432	548	-	-
	Dod04g0201	824	ProSitePatterns	Protein kinases ATP-binding region signature.	477	499	IPR017441	GO:0005524
	Dod04g0201	824	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	596	608	IPR008271	GO:0004672\|GO:0006468
	Dod04g0201	824	MobiDBLite	consensus disorder prediction	789	824	-	-
	Dod04g0201	824	ProSiteProfiles	Protein kinase domain profile.	471	750	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod04g0201	824	Pfam	Protein kinase domain	474	745	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod04g0201	824	Pfam	Leucine rich repeat	270	310	IPR001611	GO:0005515
	Dod04g0201	824	MobiDBLite	consensus disorder prediction	789	813	-	-
	Dod04g0201	824	SUPERFAMILY	L domain-like	2	317	-	-
	Dod04g0201	824	PANTHER	OSJNBA0070M12.3 PROTEIN	1	824	-	-
	Dod04g0201	824	Gene3D	Ribonuclease Inhibitor	1	209	IPR032675	-
	Dod04g0201	824	PANTHER	RECEPTOR PROTEIN KINASE TMK1	1	824	-	-
	Dod04g0201	824	Gene3D	Transferase(Phosphotransferase) domain 1	549	769	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g0201	Dod-Chr4	2497276	2501253	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g0201	337	760	Trihelix Transcription Factor Family	AT1G70460	37.054	8.46e-81	273

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Dod04g0201		Pkinase	5.9e-47	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod04g0201	04	2497276	2501253	Dod04g0201	04	2497276	2501253	ECH