Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1842 ATGCTCGTTCATTCAGTCCCACTCTCACTGGCGCTCCACCAAATAGAGGATTTTAGGGTTAGGGATAGGGTATTAACCGCTCCTTCTTCACCTCCGTCTTCAGCCTATTCCGAAAACCATCTAGTCTCGATGGCCATGGATCCCACCAAGAAACGCAAACTAGAAGAGAACGGCTTCAACGCTGCCACCGATGACGACAACCATCTGATGCTCACCCCGGCAGACGCCCGCAAGATCATGGAGCGCTTCACGCCTGACCAGCTCCTCGACATCCTCCAGGACGCTGCCGTCCGACACGCCGACGTCCTGGCCGCCGTGCGTTCCGTCGCAGACCCCGACGTCTCCCAGCGCAAGCTATTCATCCGCGGCCTCGGCTGGGACACAACCACCGACGGTCTCCGCAACCTCTTCTCCGCGTATGGAGACCTGGAGGAGGCCGTCGTCATCCTCGACAAGGTCACCGGCAAGTCCAAGGGCTACGGCTTTGTCACCTTCCGCCACGTGGACGGCGCCCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACCGTCACCCAGCTTGCAGCGGCGGGCAACTCGGGCGCGGGCGCTAACACAGCCGATGTCGCTCTGCGGAAGATCTACGTGGCCAACGTGCCCCCGGACCTCCCCGCGGACAAGCTTCTCGCCCACTTTTCGATCTACGGGGAGATCGAGGAGGGGCCATTGGGGTTTGACAAGCAGACCGGTAAGTCGAAGGGTTTTGCACTTTTCGTGTACAAGACTGCCGAGGGGGCGCAGGCTGCGCTGATAGAGCCGGTGAAGACAGTCGATGGGAGACAACTGAATTGCAAACTGGCGATTACGGACGGGAAGCAAGGGAAACGTGGTGGTGCGGCGCCCATGGGCCATGATGGGGTTCAGGGTCATGGGAATGCCCATGGTCACGGGGATGGCATGGGGGTGCCTCCATCGTCGGTGCCGGGATCACTTTCTGGTCAGTATGGCGGTCCAGTTGGTGGTTTGGGTTCATATGGTGGGTTTGCTGGTGGGCTTCAGGGTCAGCCACCGATGGGGAGTCATCCACTGAATTCGTCCGTTGGCGGTTTGAGTTCCGTTGGGAACCAGGCCCCTACAGCGATGGGCGGTGCTGGCGGGTATGGGTCTGGGATGGGAGGCCATTACGGTGGGTATGGTGGGCCTGGGTCCGCTGGTTTCGGTGGAATGGGCGGCGGTGCTGGTGCTGGTGTTGGTGGTGGTGGGGGTGCTGGTTTGGGAGGAGGTAATGTTGGCGCTGCTGGTGCTGGTGGACTTGGTAGCGCGGGTGGCGCTGGTTCGATGTATAGATTGCCGGGTTCAGGTGGAATGCCTGGTGCTGGGTACCCTGAGAGTGGACATTACAGTTTATCATCTTCAGGATACCAGAATCAGCATCACCCACCTTCTGGGGCGTCTCCTGTTCCTAGAGTTCCGCCTGGCTCAATGTATCCAAACGTGCCCCCTTACTACTGA 1503 0.6041 MLVHSVPLSLALHQIEDFRVRDRVLTAPSSPPSSAYSENHLVSMAMDPTKKRKLEENGFNAATDDDNHLMLTPADARKIMERFTPDQLLDILQDAAVRHADVLAAVRSVADPDVSQRKLFIRGLGWDTTTDGLRNLFSAYGDLEEAVVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGAGANTADVALRKIYVANVPPDLPADKLLAHFSIYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALIEPVKTVDGRQLNCKLAITDGKQGKRGGAAPMGHDGVQGHGNAHGHGDGMGVPPSSVPGSLSGQYGGPVGGLGSYGGFAGGLQGQPPMGSHPLNSSVGGLSSVGNQAPTAMGGAGGYGSGMGGHYGGYGGPGSAGFGGMGGGAGAGVGGGGGAGLGGGNVGAAGAGGLGSAGGAGSMYRLPGSGGMPGAGYPESGHYSLSSSGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1842 500 PANTHER GEO13361P1-RELATED 46 466 - -
Dod03g1842 500 MobiDBLite consensus disorder prediction 456 500 - -
Dod03g1842 500 SUPERFAMILY RNA-binding domain, RBD 204 316 IPR035979 GO:0003676
Dod03g1842 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Dod03g1842 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 290 IPR000504 GO:0003723
Dod03g1842 500 SUPERFAMILY RNA-binding domain, RBD 109 193 IPR035979 GO:0003676
Dod03g1842 500 PANTHER UBP1-ASSOCIATED PROTEIN 2C 46 466 - -
Dod03g1842 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Dod03g1842 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Dod03g1842 500 Gene3D - 203 319 IPR012677 -
Dod03g1842 500 MobiDBLite consensus disorder prediction 481 500 - -
Dod03g1842 500 MobiDBLite consensus disorder prediction 462 479 - -
Dod03g1842 500 CDD RRM_RBM24_RBM38_like 117 191 - -
Dod03g1842 500 SMART rrm1_1 210 282 IPR000504 GO:0003723
Dod03g1842 500 SMART rrm1_1 118 190 IPR000504 GO:0003723
Dod03g1842 500 CDD RRM_RBM24_RBM38_like 209 284 - -
Dod03g1842 500 Gene3D - 100 202 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1842 Dod-Chr3 33788300 33789802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1842 205 394 C2H2 Transcription Factor Family AT2G19380 30.256 1.38e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1842 03 33788300 33789802 Dod03g1842 03 33788300 33789802 ECH