Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00943 ATGATGGCTACTCGCAACATTGAGAAGATGGCCTCAATTGATGCTCAGTTGAGGTTGCTGGCGCCACGCAAGGTGTCTGATGATGACAAACTCGTTGAGTATGATGCTTTGTTGTTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTCCAAGATTGTTATGAGCTGTCAGCCGAGTACGAAGGAGAGCATCGTCCTGAAAAGTTGGAGGAACTTGGGAATATGCTGACTGGTCTAGATGCTGGGGATTCAATTGTTATTGCCAAGTCATTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCGTACCGAAGAAGGATCAAGCTATTGAAGAAGGGTGATTTTGCTGATGAGAACTCTGCCATGACTGAGTCAGACATTGAAGAGACTTTCAAGAGGCTTGTGACTCAACTGAAAAAGACCCCCCAGGAAATCTTTGATGCTTTGAAGAACCAAACTGTGGATTTGGTCCTAACTGCTCATCCTACTCAGTCTGTTCGCAGATCGTTGCTGCAAAAGCATGGAAGGATAAGGAATTGTTTGACACAATTATATGCTAAAGACATAACACCAGATGACAAGCTGGAACTTGATGAGGCTTTGCAAAGAGAGATTCAAGCTGCATTTCGCACAGATGAAATTCGAAGGACTCCTCCGACACCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATTTGGAAAGGTGTACCACAGTTTCTGCGCCGGGTTGATACAGCTCTGAAGAACATTGGAATACATGAACGTGTCCCATACAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGTGATGGCAATCCCAGAGTAACCCCTGAAGTTACAAGGGATGTGTGCTTGCTGGCTAGAATGATGGCTGCTAATTTGTACTTCTCTCAGATAGAGGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCAATGACGAGCTCCGTGTTCGTGCTCATGAACTCCATAGGTCCTTAAAGAGAGATGCTAAACATTATATTGAGTTTTGGAAACAGATTCCTCCAAACGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTGTATAACACACGTGAACGTGCTCGCCAGTTATTAGCCAATGGAACGTCTGATATCCCTGAGGAGACAACCTTCACTAATGTTGAGCAGTTCCTGGAGCCTCTTGAACTGTGTTATAGGTCACTCTGCGCATGTGGTGACCGACCAATAGCAGATGGAAGCCTCCTTGATTTCCTGAGGCAAGTTTCCACATTTGGACTCTCACTTGTGAGGCTTGACATCCGTCAAGAGTCAGATAGGCACACTGATGTCATGGATGCAATCACAAAACACTTGGATATTGGATCATACAGAGAATGGTCTGAGGAAAAGAGGCAAGAGTGGCTCTTATCAGAACTCAGAGGAAAGCGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATTAATGATGTTTTGGAAACTTTCCATGTGATCTCAGAGCTTCCCCCAGACAACTTTGGTGCCTACATCATATCAATGGCCACAGCACCATCTGATGTGCTTGCAGTTGAGCTCTTACAACGCGAATGCCGTGTGAAGCAGCCACTGAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGGCTGCGCCGGCAGCGGTGGCGCGGCTTTTCTCCATAGATTGGTATAGGGACCGCATCAATGGGAAGCAAGAGGTTATGATAGGGTACTCGGACTCAGGAAAAGATGCAGGTCGTCTCTCAGCAGCTTGGGCGCTTTATAAGGCTCAAGAAGAGCTTGTGAAGGTTGCTAAGGAGTATGGTGTGAAGCTCACAATGTTCCATGGAAGAGGAGGCACTGTTGGAAGAGGAGGAGGACCAACTCATCTTGCTATATTGTCTCAGCCACCAGACACCATTCATGGCTCACTTAGAGTAACGGTTCAGGGAGAAGTCATTGAACAGTCTTTTGGAGAGGAGCACTTGTGCTTTAGGACACTTCAGCGGTTCACTGCTGCTACACTTGAGCATGGCATGCATCCTCCTGTATCGCCAAAACCGGAATGGCGTGCCCTCATGGATCAGATGGCTGCCATTGCAACTAAGGAGTATCGCTCTGTTGTTTTCAAAGAACCTCGTTTTGTTGAGTATTTCAGATGTgcaACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAGCGAAAGCCAAGTGGAGGAATTGAGTCACTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACAAGGTTCCATTTGCCAGTGTGGCTTGGCTTTGGGGAGGCATTTAAGCATGTAGTTGAGAAGGATCCAAAGAATCTCCAAGTGCTTCAGGATATGTACAATCAATGGCCTTTCTTCAGGGTCACCCTTGACTTGGTTGAAATGGTGTTTGCCAAGGGAGATCCAGGGATTGCAGCCCTTTATGACAAGCTCCTGGTATCAGGAGAGCTGTGGCCATTTGGAGAGTGTTTAAGAGCTAAATATGAAGAAACCAAGAGCTTTCTCCTCCAGGTTGCTGCGCACAAGGATCTTCTTGAAGGAGACCCCTACTTAAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTGAACGTGTTGCAAGCCTACACACTGAAGAGAATTCGTGATCCTGATTACCATGTGAAGTTGAGGCCACACTTGTCAAAGGACTGCATGGAATCAAGCAAGCCAGCAGCAGAACTTGTTAAACTTAACCCCAAAAGCGAGTATGCTCCTGGTCTTGAGGACACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAATACCGGTTAA 2904 0.4604 MMATRNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHRPEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAMTESDIEETFKRLVTQLKKTPQEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKLELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGIHERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRAHELHRSLKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLDIGSYREWSEEKRQEWLLSELRGKRPLFGHDLPKTEEINDVLETFHVISELPPDNFGAYIISMATAPSDVLAVELLQRECRVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRDRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMDQMAAIATKEYRSVVFKEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGEAFKHVVEKDPKNLQVLQDMYNQWPFFRVTLDLVEMVFAKGDPGIAALYDKLLVSGELWPFGECLRAKYEETKSFLLQVAAHKDLLEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDCMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00943 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 2 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 Pfam Phosphoenolpyruvate carboxylase 37 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PRINTS Phosphoenolpyruvate carboxylase signature 169 182 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PRINTS Phosphoenolpyruvate carboxylase signature 222 238 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PRINTS Phosphoenolpyruvate carboxylase signature 282 297 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Cca10g00943 967 Hamap Phosphoenolpyruvate carboxylase [ppc]. 24 967 IPR022805 GO:0006099|GO:0008964|GO:0015977
Cca10g00943 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 2 967 - -
Cca10g00943 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 170 181 IPR018129 -
Cca10g00943 967 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 34 967 IPR015813 GO:0003824
Cca10g00943 967 Gene3D Phosphoenolpyruvate/pyruvate domain 310 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00943 Cca-Chr10 10884200 10890609 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00943 10 10884200 10890609 Cca10g00943 10 10884200 10890609 ECH
Cca04g01501 04 21328333 21337481 Cca10g00943 10 10884200 10890609 PCT