Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00938 ATGTCCAACACAACGCAGCAACAGCAACAGCAACCACCCAGTTTCGAATCCAAACGACTCGATCCAgcctccaacgtcgccgccgccgccgcttcccgccccggccaccgGAGATCGGTCTCCGCCGGAGCTCCGTTAATCTACTCCGGCGGCGCCACCTTGCTCCCGAGCGGCAACATTTGCCCGTCCGGGAAGATCCTCAAACCGGTTCTGCCCTCGCGGGGACCGAACCGGACCGACGTGCTGGGCTCCGGCACCGTAAACTACGGCCGCGGCAGCATAATGCGCGGCGGAGGCGGCAATCCGGTGGCCGCGGGCGCATCGCCGCTTACGGTGAGGCGCGCGCTGAGCGGCTCCGATCCCGAGGAGGCGCGGAGATTGGGGAACGAGCTGTACAGAAGCGGCAGCTTCGCGGAGGCGCTGGCGCTGTACGATCGCGCCGTCGCCATCTCGCCGGGGAACGCCGCGTGCCAGAGCAACCGCGCGGCGGCGCTCACGGCTGTCGGGAGACTCGGCGAGGCCGCGAGGGAGTGCCTTGAGGCTGTGAAGTTGGAGCCTGCTTTTGCCAGAGCGCATAAGAGACTTGCTTCACTTTATCTTAGgtttggaCAGGTTGAAAATTCGCGGCGGCACTTGTGTCTCTCTGGGATTCAAGAGGATCAATCTGAGGAGCAGAAGCTGTTGTTGTTGGAGAAGCATTTGAACCGCTGTGCTGATGCAAGAAAATTTGGTGATTGGAAGAGGGCGCTTAGGGAATCAGAATCATCCATTTCTGTTGGATCATATTGTTCTCCTCAGATTGTTGCTTGCAAGGCCGAAGCTTATTTAAAACTGCATCAACTTGAGGATGCTGAATCCAGTCTCTTGAACATTCCGAAGTTGGAAGGCTGTCCTCCAGCATGTTCTCAAACCAAGTTCTTTGGTATGGTCGGTGAAGCCTATGTTCCTTTTGTGTCCGCGCAGGTTGAGATGGCCATGGGAAGGTTTGAGAATGCTGTTGCGGTGGCAGAAAAGGCTAGCCTGTTGGATTATAGTAACATTGAAATTAGTAGGATTGTAAATGTTGTGAAAATGGTGGCAAGAACTCGTTTGAGAGGCAATGATCTTTTCAGTTCTGGCAAGTTTTCTGAAGCTTGTTCTGCTTATGGAGAGGGCCTCAAGTATGACAACTCCAATTATATTCTATATTGCAATAGGGCTATTTGTTGGTCTAAACTTGGCCTGTGGGAACAATCTGTTCAAGACTGCAACCAAGCCCTTAGCATTCAACCAAATTACACCAAGGCCCTTTTCCGCAGGGCTGCGTCAAATGCAAAGCTTGAAAGATGGGCAGAAGTTGTTAAAGATTACCAGGTCTTAAAGCACGAACTCCCTAATAACAATGAAGTTGCTGAGTCTCTTCGTCAGGCTCAACTTGCATTGGAAAAATCTCGGCTAGTGGTATATGGTACTAAGTTTGGAGTTGAAGTTGAAGAAATCTCTGCATTAGATAAATTTAAAGCCGCGATTGCTTCCGCTGGTGTTTCGGTAGTTTATTTCAAAGAGGCATCAAACGAACTATGTGAGGAATTATCTCCATTCATAAATACGTTGTGTGTTAGATACCCCTCTGTTAAATTTATCAAGGTGGACGTGGAGGAGTGTCTAGTAATAGCAAAAGCTGAAAGCATAAGAAGTGTTCCAACTTTCAAAATTTATAAAAAAGGAGAGAAGGTGAAGGAGATGATCCGGCCAAACCATCAATTATTAGAGGACTCAGTAAGGAAAAGTAGTAGTGTCTAG 1782 0.4826 MSNTTQQQQQQPPSFESKRLDPASNVAAAAASRPGHRRSVSAGAPLIYSGGATLLPSGNICPSGKILKPVLPSRGPNRTDVLGSGTVNYGRGSIMRGGGGNPVAAGASPLTVRRALSGSDPEEARRLGNELYRSGSFAEALALYDRAVAISPGNAACQSNRAAALTAVGRLGEAARECLEAVKLEPAFARAHKRLASLYLRFGQVENSRRHLCLSGIQEDQSEEQKLLLLEKHLNRCADARKFGDWKRALRESESSISVGSYCSPQIVACKAEAYLKLHQLEDAESSLLNIPKLEGCPPACSQTKFFGMVGEAYVPFVSAQVEMAMGRFENAVAVAEKASLLDYSNIEISRIVNVVKMVARTRLRGNDLFSSGKFSEACSAYGEGLKYDNSNYILYCNRAICWSKLGLWEQSVQDCNQALSIQPNYTKALFRRAASNAKLERWAEVVKDYQVLKHELPNNNEVAESLRQAQLALEKSRLVVYGTKFGVEVEEISALDKFKAAIASAGVSVVYFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEECLVIAKAESIRSVPTFKIYKKGEKVKEMIRPNHQLLEDSVRKSSSV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00938 593 MobiDBLite consensus disorder prediction 1 40 - -
Cca10g00938 593 Pfam Thioredoxin 497 580 IPR013766 -
Cca10g00938 593 Pfam Tetratricopeptide repeat 126 183 - -
Cca10g00938 593 SUPERFAMILY Thioredoxin-like 402 585 IPR036249 -
Cca10g00938 593 Gene3D Glutaredoxin 481 591 - -
Cca10g00938 593 CDD TRX_family 499 579 - -
Cca10g00938 593 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL4 18 589 - -
Cca10g00938 593 MobiDBLite consensus disorder prediction 1 18 - -
Cca10g00938 593 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Cca10g00938 593 SUPERFAMILY TPR-like 121 347 IPR011990 GO:0005515
Cca10g00938 593 SMART tpr_5 359 392 IPR019734 GO:0005515
Cca10g00938 593 SMART tpr_5 313 346 IPR019734 GO:0005515
Cca10g00938 593 SMART tpr_5 427 460 IPR019734 GO:0005515
Cca10g00938 593 SMART tpr_5 121 154 IPR019734 GO:0005515
Cca10g00938 593 SMART tpr_5 155 188 IPR019734 GO:0005515
Cca10g00938 593 SMART tpr_5 393 426 IPR019734 GO:0005515
Cca10g00938 593 Gene3D Tetratricopeptide repeat domain 119 479 IPR011990 GO:0005515
Cca10g00938 593 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 18 589 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00938 Cca-Chr10 10844824 10847943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00938 133 206 Glycosyltransferase AT3G04240 32.432 6.76e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00938 10 10844824 10847943 Cca10g00938 10 10844824 10847943 ECH
Cca04g01499 04 21290129 21294158 Cca10g00938 10 10844824 10847943 PCT