Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02775 ATGGGTCTTGGTTTGAAGATGAAGAGCCTGGGGCACCATCCTGTGACTTCGAAGTTACATGAGCAAGCAGGGAGCAATAGAAAGTACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGTTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGTTGTTGCATCTATAGTGAAATGGATGCTGACACTAAAGTCCGAAGGAAAGAGGTGCTAGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCACTACTACAGAACCCCTTCTGCCATTGACCAGGAAACCTTTGCTGAGTATACAGCCAGGACAGCATTTGAACGGCCATTACTCAGTGGGGTGGCCTATGCACAAAGAGTTGTTAACTCAGAGAGAGAAACATTTGAAAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGACCCTTCTCAGGTTAGAGACGAGTATGCACCGGTGATATTTGCACAAGAAACTCTCGCTTACCTTGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCAACTGGGAAAGCTGTTCTCACTAGTCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTATAAGTCTAAGCTCCCTCCAAAGCCAACGATGCAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGACCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGCAACCAAGCAATTTTGGTTAACGTATTTGATATCACAAACTCTACGGATCCCTTAATCATGTATGGCAACCAAAATGAAGAAGGCGATAAGTCTCTTATCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATACAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACCACAGCATTCTTATTCTTTGTGATTCTTTTTTTAGTGGGTTATATCTTATATGGTGCTGGAAATCATATTGTCAAAGTAGAGGATGATTTTCATGCAATGGAGGTATTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAAAAACAGAATTGAGTTCAACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGTTGGAAGCAGTTCCATTTGACCTTCGATCCATACTTGATGATGTCCTTTCTCTTTTTTCTCAGAAGTCTCGGAAAAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGACATAGTAATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTTACTGAGAGAGGACATATATTTGTGAAAGTCCATGTAGCTGAAAAAAGGATGTCCACAATCAATGGAAAAATGGAGACTTTTCTAAATGGAGGATCAGATGAAGTTGTGCATATGTCTAGTGGTTACAATTTCAAAACTTTAAGTGGATATGAAGCAGCTGATGAAAGGAACATCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTTCATTGATGCCTCAGTTAAAAAAGTAGCCTCCAATGAATATTCTGAGCAAGTCACCTTGGTAGTCAGTGTAGAGGACACTGGTATTGGAATTCCTGTGTCTGCGCAAGATAGGATTTTTATGCCTTTTGTTCAGGCCGATAGCTCAACTTCTAGACATTATGGTGGTACTGGCATTGGTTTAAGTATTAGTAAGTGTTTGGTTGAACTAATGGGTGGTGAGATAAGTTTCATAAGCCGCCCGCAGGTTGGGAGCACATTTTCATTTACTGCAGATTTCGGAACGGTTAAGAAAAATTCAATAACTGACATGAAGAAACACAATTTGGAAGAACTGTCTTCAGGTTATAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTTACTGGATACCATTTGAAGAGACTAGGGATACAGGCTAAAGTTGCAAATAACATCTATAAGGCTGTTTCTTTATGTGGGAAAAATGGCTCTTTGACTTCGGGATTATTTCAGCCGGATATTATTTTTGTTGAGAAAGATTCATGGGTTTGTGGAGAGGATGGGAGCTTCAATGTGTGGCAACTGGACTGGAAACAGAATGGACACATGTTTAAGATACCTCAAATGATCCTTCTTGCGACCAAAATTGACAATGCTGAATATGATAAAGTTAAAGCTGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTAAGAGCTAGCATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGAACGGGGAAGAAGAGGCAGCTAGGGGAAGACATGAAGCCTAATGGTTCATCTTTTGTACGAAACTTGCTTTGTGGAAGAAAAATCTTAGTGGTTGATGACAATGTTGTAAACCGGAGGGTCGCTGCAGGTGCATTGAAAAATTTTGGAGCTGATGTCAAATGTGCTGACAGTGGCAAAGCTGCTCTTGAAATGCTTCAGTTGCCTCACAGTTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACTCGGCGCATTCGGACGATGGAGAGAAGGGCAAATGAGCAACAGATAAATGGTGAAGGAAGTGGCTGGAAAAATGAGTACCATATACCTATATTGGCCATGACAGCTGATGTAATTCAGGCAACATACGATGAGTGTGTAAAATGTGGCATGGACGGGTATGTATCAAAGCCTTTTGAGGAAGAGAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTTCCTCGGACTCACTACAGAATGGCACTACTTAA 3033 0.4161 MGLGLKMKSLGHHPVTSKLHEQAGSNRKYTFIQAHRAWLPKFLMLWILLMALIGCCIYSEMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERETFEKQHGWVIKTMERDPSQVRDEYAPVIFAQETLAYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTMQERIKATAGYVGGSFDVETLVENLLGQLAGNQAILVNVFDITNSTDPLIMYGNQNEEGDKSLIHESKLDFGDPYRKHTMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYGAGNHIVKVEDDFHAMEVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQLDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSQKSRKKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHVAEKRMSTINGKMETFLNGGSDEVVHMSSGYNFKTLSGYEAADERNIWDNFKHLIADEEFFIDASVKKVASNEYSEQVTLVVSVEDTGIGIPVSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQVGSTFSFTADFGTVKKNSITDMKKHNLEELSSGYRGLKAIVVDGKPVRAAVTGYHLKRLGIQAKVANNIYKAVSLCGKNGSLTSGLFQPDIIFVEKDSWVCGEDGSFNVWQLDWKQNGHMFKIPQMILLATKIDNAEYDKVKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGEDMKPNGSSFVRNLLCGRKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQLPHSFDACFMDIQMPEMDGFEATRRIRTMERRANEQQINGEGSGWKNEYHIPILAMTADVIQATYDECVKCGMDGYVSKPFEEENLYQAVAKFFNPKPSSDSLQNGTT 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02775 1010 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Cca09g02775 1010 SUPERFAMILY CheY-like 701 836 IPR011006 -
Cca09g02775 1010 Pfam Response regulator receiver domain 864 992 IPR001789 GO:0000160
Cca09g02775 1010 SMART CHASE_2 110 295 IPR006189 -
Cca09g02775 1010 ProSiteProfiles Response regulatory domain profile. 705 835 IPR001789 GO:0000160
Cca09g02775 1010 CDD HisKA 383 444 IPR003661 GO:0000155|GO:0007165
Cca09g02775 1010 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 678 IPR003594 -
Cca09g02775 1010 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 675 IPR036890 -
Cca09g02775 1010 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Cca09g02775 1010 PRINTS Bacterial sensor protein C-terminal signature 623 633 IPR004358 GO:0016310|GO:0016772
Cca09g02775 1010 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Cca09g02775 1010 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Cca09g02775 1010 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 449 IPR036097 GO:0000155|GO:0007165
Cca09g02775 1010 Coils Coil 433 453 - -
Cca09g02775 1010 Pfam CHASE domain 113 293 IPR006189 -
Cca09g02775 1010 Gene3D - 61 113 - -
Cca09g02775 1010 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155|GO:0007165
Cca09g02775 1010 PANTHER HISTIDINE KINASE 4 24 999 - -
Cca09g02775 1010 Gene3D CHASE domain 114 329 IPR042240 -
Cca09g02775 1010 SUPERFAMILY CheY-like 861 997 IPR011006 -
Cca09g02775 1010 Gene3D - 357 446 - -
Cca09g02775 1010 CDD REC_hyHK_CKI1_RcsC-like 864 992 - -
Cca09g02775 1010 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 999 - -
Cca09g02775 1010 CDD HATPase_EvgS-ArcB-TorS-like 500 678 - -
Cca09g02775 1010 Gene3D - 447 684 IPR036890 -
Cca09g02775 1010 SMART HKATPase_4 495 680 IPR003594 -
Cca09g02775 1010 ProSiteProfiles Histidine kinase domain profile. 390 680 IPR005467 -
Cca09g02775 1010 SMART HisKA_10 383 448 IPR003661 GO:0000155|GO:0007165
Cca09g02775 1010 ProSiteProfiles Response regulatory domain profile. 863 996 IPR001789 GO:0000160
Cca09g02775 1010 SMART REC_2 862 992 IPR001789 GO:0000160
Cca09g02775 1010 Gene3D - 857 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02775 Cca-Chr9 53380561 53386174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02775 24 1004 Histidine Kinase Gene Family AT2G01830 68.990 0.0 1375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca09g02775 HATPase_c 2.9e-32 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02775 09 53380561 53386174 Cca09g02775 09 53380561 53386174 ECH