LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g02762	ATGGTGAAATCCAACGATAATGGTTCCGTTTCGGTgcctcctttcctgaagaaatgttacgatatggtggaagaccaaaacaccgactccgtcatccgttggagccacggcggcgacagcttcgtcatctccgacctcactcaattctccgtcacgctccttccttcttatttcaaacacaacaacttctccagcttcatcaggcaactcaatatctatGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAACTTTGTTAGGGGTCAGAAGCAGTTGTTGAAGAATATACACAGAAGGAAACATCCACACATTGCGGATCAGCAAAAAGCATTGCCGCAGAAAGACAATTGTGAGGAACCATCACAAGAAGCACCGAATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAATCTGATAAAAATTCACTCACGCAAGAGTTGGTCAAACTTAGGCAACACCAGGAGTCTGCTGAGAAGAAGTTGCTGCGTCTGAGTGATCGCATTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTCTTAGTCATGGTTGTGCAAAGCCCAGGGTTCATGGTTCAGCTGCTTCAGCCTAAGGAAAATAATTGGCGTTTGGCTGAGTCATGGAACATATTGGATCAAGATAAACAAGATGACAGGCCAGTTCCTTCTGATGGGATGATAGTAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCGCTATCTCCTGGTTTCGATACGCAGCCAGATCCCGAGTTTTCTGCAGATGGGCTAAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTGTCTCCATTAGAAAATCATTCTCCATTTCTCGTACCAGATTTACCTGATGATGGTTTGTGGGAACAGCTTTTTCTAGGTAGTCCTTTCCTGGGAAACACTGAAGATTCTAATAAAGAAAGTGAAGGGCGCACCGATAATGAAATGGAGATGGAACCCATAACATCCGAGACTCCAAACGAATATTCTCGAACTTTTGAATCGATGGTTGTAGAGATGGAGAAAGCTCAAGAGTGA	1089	0.3499	MVKSNDNGSVSVPPFLKKCYDMVEDQNTDSVIRWSHGGDSFVISDLTQFSVTLLPSYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKQLLKNIHRRKHPHIADQQKALPQKDNCEEPSQEAPNHGLWKEVENLKSDKNSLTQELVKLRQHQESAEKKLLRLSDRIQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPKENNWRLAESWNILDQDKQDDRPVPSDGMIVKYKPPVGEKLKPVVPLSPGFDTQPDPEFSADGLKDLCISSEFLKVLLDEKLSPLENHSPFLVPDLPDDGLWEQLFLGSPFLGNTEDSNKESEGRTDNEMEMEPITSETPNEYSRTFESMVVEMEKAQE	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g02762	362	PRINTS	Heat shock factor (HSF) domain signature	15	38	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g02762	362	PRINTS	Heat shock factor (HSF) domain signature	53	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g02762	362	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g02762	362	Coils	Coil	138	179	-	-
	Cca09g02762	362	MobiDBLite	consensus disorder prediction	109	132	-	-
	Cca09g02762	362	MobiDBLite	consensus disorder prediction	315	346	-	-
	Cca09g02762	362	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	346	IPR027725	-
	Cca09g02762	362	SMART	hsfneu3	11	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g02762	362	MobiDBLite	consensus disorder prediction	321	335	-	-
	Cca09g02762	362	ProSitePatterns	HSF-type DNA-binding domain signature.	54	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g02762	362	SUPERFAMILY	"Winged helix" DNA-binding domain	11	104	IPR036390	-
	Cca09g02762	362	Gene3D	-	7	105	IPR036388	-
	Cca09g02762	362	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-8	1	346	-	-
	Cca09g02762	362	Pfam	HSF-type DNA-binding	15	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g02762	Cca-Chr9	53261899	53264698	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g02762	1	313	HSF	AT1G67970	50.156	4.20e-94	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Cca09g02762		HSF_DNA-bind	3.7e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g02762	09	53261899	53264698	Cca09g02762	09	53261899	53264698	ECH