Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02756 ATGGCCGAAATCCCCTCTGAGGCTTCTCAATTCTCAGCTAGTCTTAGGGTCCTTGCAATTGATACTGACCCCACAGTTCTTGAGTTCATTAAGCAAATCTGCGTTGGACTCCAATATCAAATTATCATATGCACTGAATCTCTGTTTGCTTTGAATCTTGTGAGGGAAAGCAGTGGTTCCGTTGATGTGATACTTATGGAGCTTCACATGCCAGACATGGATGGCCATGAATTCCTTCAGCATGTCAAGAAGGATATTCCTGTTATCGTGATGTCTGCTGATGATGCTAAGAGTTCAATAATGAAGGCCGTTGCAAATGGGGCGTGTGATTATTGGATTAAGCCTTTGCAAGAGAACCAGTTGAAGAACATCTGGACACATGCAGCTAGGAAAGTCTTGACTGAAAACAATTTTGGCAGATTGGAAGATGATGATAGCAGAAAACGGGACAAAGATAATTCTGAGTTTGGTTCTTCTACTGATAATGATGTAACAGGAGGAGTCGCTAGCAGTTCAAGAGAACCCGACGAGGTTGATGAATCAGATAATTCTCATCAACCTCCAGCAAAAAGGCCACGTGTAATCTGGACACCAAATCTGCATCGTGACTTTGTCAAGGCAGTGAAGCAAATTGGGGATGACAAGGCTGTGCCAAAGAAAATTCTTGAAGTGATGAATATCCCTGGTTTGACAAGAGAGAATATTGCTAGTCATTTGCAGAAATATAGGCATTATATTAAGAGTTCGTCAAATGAAGCAACACAACAGAATGAGATGGCGTTCATTCAAGGGACTACAGAATCTAGTTCAAGAGTGGAATCTTTGGGTGCTCCTAGCCATGTTGCCTATAACACACTGGCAACCCTTAATTCTGCTCCTAGCCAAGCTTCGTTTAATACACTGCCAACCCTTAATCCGGCTCCTACCCCAAGTATACAACTGCTTAACCATTCCCATCCAGAACAAGGTCATCCTTCTAACATTTCCATTGCCAATAATTTCCCTCAGCCAATCATAGATCCATCTATATATGGAGGAGTGTGGCCCCAAATGGGTATTCAGAGAAGCAATGTGTTGATGGATACATTGCAGCAGCAGCAAAGGCAGCAGTCAATGATGCATCTTCAAATAAGTCCTCAGCCATCTAGCTTGATGATTTCTGGAAATCCATCTTTTGTCACCCAGAATATTAGTTATGGTCTACTATCAACTCAACCTATTAATTCACTTGGTGTTTCTCAAATACAAGGTGGAAACAACTCAGGTTTCACAAGTGGTGCTGTAAGATCTTttcctgcaccaggctcagatgcactagttccctatggttcaacatctGCTGACTTAATTTATCAAGAGAATACCAGCATCCCACCTAGGTCACTAGAAGATACATCATTTGCAAGCGGTTCTAGAAACCCAAATTTCTCCAAAGATATTATTGTTGATGACAACACAACAAAGGAGGAAGAACCAAATTAA 1482 0.4015 MAEIPSEASQFSASLRVLAIDTDPTVLEFIKQICVGLQYQIIICTESLFALNLVRESSGSVDVILMELHMPDMDGHEFLQHVKKDIPVIVMSADDAKSSIMKAVANGACDYWIKPLQENQLKNIWTHAARKVLTENNFGRLEDDDSRKRDKDNSEFGSSTDNDVTGGVASSSREPDEVDESDNSHQPPAKRPRVIWTPNLHRDFVKAVKQIGDDKAVPKKILEVMNIPGLTRENIASHLQKYRHYIKSSSNEATQQNEMAFIQGTTESSSRVESLGAPSHVAYNTLATLNSAPSQASFNTLPTLNPAPTPSIQLLNHSHPEQGHPSNISIANNFPQPIIDPSIYGGVWPQMGIQRSNVLMDTLQQQQRQQSMMHLQISPQPSSLMISGNPSFVTQNISYGLLSTQPINSLGVSQIQGGNNSGFTSGAVRSFPAPGSDALVPYGSTSADLIYQENTSIPPRSLEDTSFASGSRNPNFSKDIIVDDNTTKEEEPN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02756 493 MobiDBLite consensus disorder prediction 173 187 - -
Cca09g02756 493 SUPERFAMILY Homeodomain-like 189 248 IPR009057 -
Cca09g02756 493 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 377 - -
Cca09g02756 493 MobiDBLite consensus disorder prediction 141 195 - -
Cca09g02756 493 Pfam Response regulator receiver domain 17 123 IPR001789 GO:0000160
Cca09g02756 493 Gene3D - 14 181 - -
Cca09g02756 493 MobiDBLite consensus disorder prediction 457 493 - -
Cca09g02756 493 SUPERFAMILY CheY-like 14 137 IPR011006 -
Cca09g02756 493 Gene3D - 189 248 - -
Cca09g02756 493 CDD REC_typeB_ARR-like 17 129 - -
Cca09g02756 493 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 377 IPR045279 GO:0009736
Cca09g02756 493 MobiDBLite consensus disorder prediction 457 481 - -
Cca09g02756 493 Pfam Myb-like DNA-binding domain 196 243 IPR001005 -
Cca09g02756 493 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 192 244 IPR006447 GO:0003677
Cca09g02756 493 SMART REC_2 15 125 IPR001789 GO:0000160
Cca09g02756 493 MobiDBLite consensus disorder prediction 141 157 - -
Cca09g02756 493 ProSiteProfiles Response regulatory domain profile. 16 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02756 Cca-Chr9 53222042 53224562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02756 11 229 Response Regulator Gene Family AT4G16110 42.241 2.79e-54 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca09g02756 Response_reg 9.3e-17 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02756 09 53222042 53224562 Cca09g02756 09 53222042 53224562 ECH