Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02751 atggccatggctaaagagaaagaCGAGGTTCACAACACTGGCAAGCGGTTGAAATGCATGAGGAATCAACAGCAACAAGAAGATGAAGTTGTTGAAGAGGAAGACACTGAGCTTCCTCTCAAACCAGGATTGTTCTTCTACCCCACAACCCCCACTTCCTTTGTTGTTTCTGATGCTCTTGAACCCGATTTTCCGATCATATATGTTAACAAGGTCTTCGAAATCTCCACCGGATATCGTGCTGACGAGGCCCTTGGTCGCAACTGTCGGTTCTTACAGTATAGAGATCCACGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGCGAGCTTCTGAATTTCCGAAAGGATGGTACTCCTTTGGTGAACAGACTGAGGCTTGCACCAATTCATGATGATGATGGAACTGTGACACACGTAATAGGTATCCAACTCTTTTCTGAGGCAAACATAGATCTTAACCGTGTCTCGTATCCAGTTTTCAAAGAGACTTGCAATCAAGAGTTTGATAAGAGCGGTAAATATTCTACCAAGAGTGGACAATCATTGTACAGTCAGCACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAGGTCTTGGCTCACAACATTTTGTCACGCTTGACACCAAGGGATGTCGCATCCATTGGCTCTGTGTGCAGGAGGATTCGTCAATTAACGAAGAATGAGCATGTGAGGAAGATGGTATGTCAAAATGCTTGGGGCAAAGAAGTGACCGGCACATTGGAACTGATGACCAAGAAGTTAGGATGGGGCCGTCTGACTCGGGAGCTTACTACTCTCGAGGCTGTTTGTTGGAGGAAACTGACAGTTGGAGGCGCAGTGGAGCCTTCGCGCTGCAATTTCAGTGCTTGTGCTGCCGGTAACAGGCTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAGCCAATGGATGACACTTTTGTTCTAAATCTTGATGCTAAGAATCCAGAATGGCGCAGGGTTAGCGTGAAATCATCCCCACCGGGGCGGTGGGGCCACACGCTCTCATGCTTGAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGCAGGCAAGGACTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTCTGTGGCGGAACGCCGCCACTTCCTAGATCATGGCACAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTCTCCGGCGGGTGCACCGATGCAGGTGTGCTTCTTAGCGACACATATTTGCTGGACCTCACCACAGATAATCCAACATGGAGGGAAATTCCAACTTCCTGGGCACCTCCTTCTAGGTTGGGACACTCTCTCTCAGTCTATGGGAGGACTAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTGAGGCTAAGATCAGGTGAGGCTTATACAATTGACTTGGAAGATGAACAACCACAATGGAGGCAACTAGAGTATAGTGCATTCACAGGGTTGGCTAGTCAAAGTGCTGTAGTTCCTCCTCCTAGGCTGGACCATGTTGCTGTGAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCAATTGCTGGTCTTCACTCACCATCTCAGCTATTTCTGTTGGACCCTTCTGAAGAGAAACCATCGTGGAGGATCCTCAATGTTCCAGGGCAACCACCAAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACGAGGGTGTTGGTGTTGGGTGGACACACTGGGGAGGAATGGATACTCAATGAGTTGCATGAGTTGTGCTTGGCAAGTCGACAAGACTCTGACCTGTGA 1872 0.4765 MAMAKEKDEVHNTGKRLKCMRNQQQQEDEVVEEEDTELPLKPGLFFYPTTPTSFVVSDALEPDFPIIYVNKVFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQEFDKSGKYSTKSGQSLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02751 623 TIGRFAM sensory_box: PAS domain S-box protein 65 160 IPR000014 -
Cca09g02751 623 PANTHER ADAGIO PROTEIN 3 5 620 - -
Cca09g02751 623 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 161 IPR035965 -
Cca09g02751 623 Pfam Galactose oxidase, central domain 418 469 - -
Cca09g02751 623 Pfam Galactose oxidase, central domain 369 416 - -
Cca09g02751 623 Gene3D PAS domain 47 172 - -
Cca09g02751 623 Gene3D - 197 297 - -
Cca09g02751 623 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 5 620 - -
Cca09g02751 623 CDD PAS 50 160 IPR000014 -
Cca09g02751 623 Pfam F-box domain 210 247 IPR001810 GO:0005515
Cca09g02751 623 Pfam Galactose oxidase, central domain 304 354 - -
Cca09g02751 623 SMART pac_2 125 166 IPR001610 -
Cca09g02751 623 Pfam PAS domain 60 160 IPR000014 -
Cca09g02751 623 Pfam Kelch motif 528 575 IPR011498 GO:0005515
Cca09g02751 623 Gene3D - 362 486 IPR015915 GO:0005515
Cca09g02751 623 Gene3D - 487 617 IPR015915 GO:0005515
Cca09g02751 623 SUPERFAMILY Galactose oxidase, central domain 291 608 IPR011043 -
Cca09g02751 623 SUPERFAMILY F-box domain 204 278 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02751 Cca-Chr9 53194860 53197484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02751 53 162 AGC Kinase Gene Family AT5G58140 44.545 1.89e-21 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02751 09 53194860 53197484 Cca09g02751 09 53194860 53197484 ECH