Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02750 ATGGCGACGATGACGAGCTTGATCGGTCTCATCAATAAGATCCAGCGAGCCTGCACCGTCTTGGGCGATCACGGCGGCGAAGGTTTGTCGCTTTGGGAGGCTCTTCCCTCCGTCGCCGTCGTCGGTGGACAGAGTTCAGGGAAATCGTCGGTGCTAGAAAGTGTGGTCGGAAGAGATTTTCTGCCTCGTGGATCTGGTATTGTTACACGGAGGCCACTAGTGCTGCAACTTCACAAGACGGAAGATGGGACACACGAGTATGCTGAGTTTCTTCACTTACCGAGAAGGAGATTCAGTGACTTTGCTGCTGTGAGGAAGGAAATAGCAGATGAAACAGATCGTATAACTGGGAAGACAAAACAAATTTCTAACATTCCAATTCACCTAAGCATTTATTCTCCAAATGTTGTAAACTTAACCCTCATAGATCTTCCTGGGTTAACAAAGGTTGCAGTAGAGGGACAACAGGAGAGTATTGTTCAAGATATTGAAAACATGGTCCGGTCTTATGTTGAAAAGCCAAACTGCATTATCTTAGCTATCTCTCCTGCAAATCAAGATATTGCCACGTCAGATGCCATAAAAATGGCAAGAGAAGTTGACCCATCAGGTGAAAGAACATTTGGTGTTGTTACCAAACTTGACCTTATGGATAAAGGAACCAATGCAGTTGATGTTCTTGAGGGAAGGCAATACAGGCTGCAGCATCCATGGGTTGGAATTGTGAACCGTTCACAAGCTGATATTAATAGAAATGTTGACATGATGGCTGCTCGTAGGAAGGAACGTGAATATTTTGAGACAAGTCCTGAATATGGACATTTGGCACATAAAATGGGCTCAGAATATCTTGCCAAGCTTCTATCTCAGCATTTGGAGCAAGTTATCAGGCAGAAGATACCTAGTATTATTGCCTTAATCAATAAGACTATTGACGAGCTTAATGCTGAGTTGGACCGTATTGGCAGGCCAATTGCTGTGGACTCAGGGGCCCAACTATACACTATTTTAGAGATGTGTCGTGCATTTGACAAAGTATTTAAAGAACACTTGGATGGAGGACGTGCTGGTGGTGACCGGATATATGGAGTTTTTGATCACCAATTACCGGCTGCTTTAAAAAAGCTCCCTTTTGATCGCCATCTTTCCTTAAAAAATGTCCAAAGAGTTGTCACAGAAGCTGATGGGTATCAGCCCCATCTAATTGCTCCAGAGCAGGGTTATAGAAGACTCATTGAAGGGTCTATTGGATATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTCCACTTTGTTTTAAAGGAACTTGTGCGGAAGTCAATTGCAGAAACTGAGGAACTAAAAAGATTTCCAACACTTTCAAGTGATATAGCAACTGCTGCAAATGAGGCTCTGGAAAAGTTCCGAGATGAAAGCAGGAAGACAGTTCTACGGTTGGTTGATATGGAGTCTAGCTATCTAACAGTGGAATTTTTCAGGAAGATTCATTTTGAACCAGAAAAGAATCCAAATGGACCACCAAATCGGAATGGTCCTCCGGGACCTCCCCCCAATATGGACAGTTATACTGACAATCACCTGCGCAAAATTGGATCAAATGTAAGTTCCTATATCAATATGGTTTGCGATACCCTTAAGAATACTATACCAAAGGCCGTGGTTTATTGTCAAGTTAGAGAGGCGAAGAGATCATTGTTAAACCACTTTTACGTTCAAGTTGGGAGGAAGGAGAAGGAGAAATTGGGTGCTATGTTAGATGAAGACCCAGCCCTTATGGAAAGGAGAAATCAAATAGCTAAAAGGCTTGAATTATACAAGCAAGCTAGGGATGATATTGACTCCGTGGCATGGAAATAA 1860 0.4312 MATMTSLIGLINKIQRACTVLGDHGGEGLSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTHEYAEFLHLPRRRFSDFAAVRKEIADETDRITGKTKQISNIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQQESIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKMAREVDPSGERTFGVVTKLDLMDKGTNAVDVLEGRQYRLQHPWVGIVNRSQADINRNVDMMAARRKEREYFETSPEYGHLAHKMGSEYLAKLLSQHLEQVIRQKIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILEMCRAFDKVFKEHLDGGRAGGDRIYGVFDHQLPAALKKLPFDRHLSLKNVQRVVTEADGYQPHLIAPEQGYRRLIEGSIGYFKGPAEASVDAVHFVLKELVRKSIAETEELKRFPTLSSDIATAANEALEKFRDESRKTVLRLVDMESSYLTVEFFRKIHFEPEKNPNGPPNRNGPPGPPPNMDSYTDNHLRKIGSNVSSYINMVCDTLKNTIPKAVVYCQVREAKRSLLNHFYVQVGRKEKEKLGAMLDEDPALMERRNQIAKRLELYKQARDDIDSVAWK 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02750 619 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Cca09g02750 619 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 301 IPR030381 GO:0005525
Cca09g02750 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 309 IPR027417 -
Cca09g02750 619 MobiDBLite consensus disorder prediction 506 520 - -
Cca09g02750 619 PANTHER DYNAMIN 4 619 IPR022812 -
Cca09g02750 619 Gene3D Dynamin, middle domain 334 596 - -
Cca09g02750 619 SMART dynamin_3 4 252 IPR001401 GO:0003924|GO:0005525
Cca09g02750 619 Gene3D - 4 310 IPR027417 -
Cca09g02750 619 PRINTS Dynamin signature 35 53 IPR022812 -
Cca09g02750 619 PRINTS Dynamin signature 60 77 IPR022812 -
Cca09g02750 619 PRINTS Dynamin signature 133 150 IPR022812 -
Cca09g02750 619 PRINTS Dynamin signature 183 201 IPR022812 -
Cca09g02750 619 PRINTS Dynamin signature 202 218 IPR022812 -
Cca09g02750 619 PRINTS Dynamin signature 225 244 IPR022812 -
Cca09g02750 619 Pfam Dynamin central region 222 489 IPR000375 -
Cca09g02750 619 Pfam Dynamin family 38 213 IPR045063 -
Cca09g02750 619 MobiDBLite consensus disorder prediction 499 524 - -
Cca09g02750 619 PANTHER BNAA09G45430D PROTEIN 4 619 - -
Cca09g02750 619 Pfam Dynamin GTPase effector domain 524 616 IPR003130 GO:0003924|GO:0005525
Cca09g02750 619 SMART GED_2 523 616 IPR003130 GO:0003924|GO:0005525
Cca09g02750 619 CDD DLP_1 35 301 IPR001401 GO:0003924|GO:0005525
Cca09g02750 619 ProSiteProfiles GED domain profile. 528 619 IPR020850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02750 Cca-Chr9 53186790 53193809 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02750 09 53186790 53193809 Cca09g02750 09 53186790 53193809 ECH