Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02745 ATGTCGTGGGAAGACGAGATTGTGATGCGCGATGTTACCAATGCGGGCCTTGTTGTCAGCGATCGCATTGGTCGCGAAGTTTCGTCTCAGCTCGACCTCGAAGAAGCTCTAGAAGCTTCCAGATACGCTAGCCACCCTTACTCCACTCACCCCCGAGAGTGGCCCCCTTCAGTTGAGGTGGTGAATACCTGGGAGTTGCCTCCTGTGCTCATTGAAAGATATAATGCAGCTGGTGGGGAAGGAACTGCTTTTTGTGGAATATTTCCTGAGATAAGAAGGGCGTGGGCGTCTGTCGACAATTCATTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAATGTCCTGAATATAGCGGGGAGGAGCAAGCTATTTGTGCTGTTGGTCTTGCAAAATCAAAACCTGGCGTTTTTGTTGAAGCTATCCAATATCTTTTAGTTTTAGCGACACCTGTTGAGTTAATTTTAGTAGGAGTATGCTGCTCTGGAGGAGCAGATGGTTCAGATCCATTCTCAGAAGTTACGTTGCAGCCATTGCCAGAGCATACAATACCATCTGACGGGGTTACAATGACTTGTGTAGCATGTACTGATAAGGGTCGCATTTTCCTTGCTGGTCGGGATGGCCACATATATGAGGTTCTCTATTCAACTGGTTCTGGATGGCAAAAACGCTGCAGAAAAATCTGCATTACTGCTGGTTTAGGAAGTGTGATTTCTAGATGGGTTATACCAAATGTATTCAATTTTGGAGCTGTTGACCCCATTGTTGAATTGGTTTTCGACAATGAGAGACAAATATTGTATGCACGAACTGAGGAGATGAAACTCCAGGTTTATGTTCTTGGACCAAATGGTGATGGCCCATTAAAGAAAGTGGCTGAAGAAAAGAATCTTGTCAATCTGAAGGATGCACATTATGGAGCTAGACAATCAACAGGATCAAGAGTCTCAAGTCGGTCTCCAAAGCCATCTATCGTTTGCATCTCACCTTTATCTACACTTGAATCCAAGTGGCTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACCTATCTACGTCTCCTTCTAGTGGAAGCTTGACTGGGTTTAACACCAACCATCACAAGCCTAGCTGTTTAAAGGTTGTCACTTCAAGGCCTGCTCCCCCTTGGGGTGTTAGTGGTGGTCTTACCTTTGGAACCATGGCTCTTGCTGGGAGACCTCAGAATGAGGATCTCTCCCTGAAAGTCGAGGCAGCTTATTATTCTGCTGGAACTCTTATCCTTTCTGATGCATCACCTTCAACCATGCCTTCACTCCTTGTTTTGAACAGGGATTCAAGCACACAGTCACCATCAGGTAACCTAGGAACTAGTACAAGGAGTTCCCGAGCCTTACAGGAGTCTGTATCTTCTTTACCAGTTGAAGGACGAATGCTTTCTGTGGCAGATGTTTTACCTTTTCCAGATACTGCATCTACTGTGCATTCTCTATATTCTGAAATTGAGTTTGGTGGTTATGAGAGCTCTATGGAATCATGTGAAAGGGTGTCTGGCAAACTCTGGGCAAGGGGAGATCTCTCAACCCAACATATACTGCCAAGGAGGAGGATTGTTGTCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGACCACTGGACATTTTAAGACGGCTATTGGAATCGACCTCTCCGAGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCAGGTGAGGCAGCTGCAATGTGTCTAATGCTAGCTGCAAGAATAGTGCATTCTGAGAATATTATCAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGAATGCCACAACTTGAAGGTAGTAGTGCATTATCAAACACAAGAAGTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTTTTTTCAGGGGCACATGAAGGGCTCTGTTTATGTTCTTCTAGATTGCTTTTTCCTTTATGGGAACTTCCTGTTATGGTTGTAAAAGGCAATTTAGGTCCTTCAGGCACTTTATCTGAAAATGGGGTAGTTGTGTGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACAGAAACTCCGATCTTTGGAAAAATTCTTAAGATCTAGAAGAAACCAGAGGAGGGGACTTTATGGATGTGTAGCAGGTTTAGGAGACGTGAGTGGTTCCATTCTGTATGGTAATGGTTCGGCATTAGGTGCTGGAGATCGAAATATGGTCAGAAACTTATTTGGTGCATATTCTAGACATATGGAGTCCAATGGTAGCATAACAACTAATAAAAGGCAAAGGTTGCCATATAGTCCTGCTGAATTAGCTGCCATGGGGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTACTTAGATCTGGTGAAGCCCTATTTTTGCTTCAACTTCTTTCACAGCATCATGTGACTCGATTGATTCAGGGATTTGATTCTAACCTTCAACAAGCATTAGTTCAGTTGACATTTCATCAACTAGTTTGTTCTGAGGAGGGTGACCATCTTGCGACAAGACTTATATCTGCCCTCATGGAGTATTATACTGGTCCTGATGGCAGGGGGACTGTAGATGACATTAGTAGGAGACTGAGAGATGGTTGTCCAAGCTACTACAAGGAGTCTGATTACAAATTCTTCTTAGCCGTGGAAGCCCTGGAGAGAGCTGCTATGACCATAGATGCTGAGGACAAGGAGAATCTTGCAAGGGAAGCATTTAATTCCTTAAGTAAAGTTCCAGAGTCTGTTGACTTACGAACAGTTTGTAAACGTTTTGAGGATTTAAGATTTTATGAAGCTGTAGTGCGCTTACCTCTTCAAAAGGCACAGGCTCTTGACCCTGCAGGCGATGCTTATAATGATGAGATTGATGAAACTGTCAGAGAACAAGCACTTGCTCAGCGTGAGCAGTGTTATGAGATAATTATCAGTGCTTTGCGGTCTCTGAAAGGTGACACCTTGCAGAAGGAATTTGGCTCTCCCATTAGATCAAGTGTTTCACAATCTGCTCTTGATCCAGCCTCTCGGAAAAAATATATATGTCAAATTGTTCAGCTGGGTGTTCAATCACCTGACAGAATCTTTCACGAGTATCTTTACCAGGCTATGATTGATTTAGGTCTTGAGAATGAATTGCTAGAGTATGGGGGTCCTGACCTGTTGCCATTTTTGCAAAGTGCCGGTCGCAAACCCATACAGGAGGTTCGTGCTGTGACAGCCACAACTTCTCCAGTGGGGCAATCAGGAGCACCTATGTCTTCTAATCAAGTCAAATACTATGAACTTTTGGCACGGTATTATGTTTTGAAGCGCCAACATATGCTTGCAGCTCATGCTTTGCTAAGACTAGCTGAAAGGCGTTCTACCGAGGGAGTTCCTACTCTTGAACAGAGGTGTCAATACCTGAGTAATGCAGTTCTACAGGCAAAAAATGCATCTAATGGTGATGGGTTAGTAGGTTCTGCACGAAGCTCCATTGACAGTGGATTCCTAGATTTGCTTGAAGGGAAGCTTGCTGTTCTTCGTTTCCAGATAAAAATCAAAGAAGAACTAGAGTCTATGGCATCTAGGTCTGATGCTTTACCTAGCACGTCAGATTCTGCCCAAAATGGTATGGTCCTTGAGGGCAGTTCAACTGTTGATACTAATTTTGCCAATGCAACTCGAGAGAAGGCCAAAGAGCTAGCTTCAGATGTAAAGAGCATAACCCAGTTATATAATGAATATGCTGTTCCCTTTGGGCTCTGGGAGATATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGTGATACTGACAGCAGCATTGTCAGAGAGACATGGGTTAGACTTATAGATCAAGCTATCTCAAGAGGAGGCATCGCTGAAGCTTGCTCAGTACTAAAGAGGGTCGGGCCCCGCATTTATCCTGGTGATGGAGCTGTTTTACCCCTCGACATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTGAATTCAGGGGTGGAATCCGTTGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTGCAGCTGAACCTGTATTGAACGCATATGACCAATTGTTATCAAATGGGGCTATTTTGCCATCCCCAAGTGTTAGATTACGTATGCTTAGATCGGTTTTAGTGGTACTTCGAGAGTGGGCAATGTCTGTAAATTCCCAAAGGATGGGTACCAGTGCTGCTGGGCATTCCCTGATACTAGGTGGAGGATTCTCATCGGAACGTGCTGTTGCTAGCCAACGAGCTCGGGACAAGATCACAAGTTTGGCAAACAGGTATATGACTGAAGTGCGAAGGTTAGCTCTTCCACAGAACCAAACAGAACACGTCTACCGAGGTTTTAAGGAACTTGAAGAATCGTTTATAAGCCAACATTCATTTGATCGATTTTGA 4455 0.4438 MSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDLEEALEASRYASHPYSTHPREWPPSVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCSGGADGSDPFSEVTLQPLPEHTIPSDGVTMTCVACTDKGRIFLAGRDGHIYEVLYSTGSGWQKRCRKICITAGLGSVISRWVIPNVFNFGAVDPIVELVFDNERQILYARTEEMKLQVYVLGPNGDGPLKKVAEEKNLVNLKDAHYGARQSTGSRVSSRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLTGFNTNHHKPSCLKVVTSRPAPPWGVSGGLTFGTMALAGRPQNEDLSLKVEAAYYSAGTLILSDASPSTMPSLLVLNRDSSTQSPSGNLGTSTRSSRALQESVSSLPVEGRMLSVADVLPFPDTASTVHSLYSEIEFGGYESSMESCERVSGKLWARGDLSTQHILPRRRIVVFSTMGMMEIVFNRPLDILRRLLESTSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENIISNVIAEKAAEAFEDPRVVGMPQLEGSSALSNTRSAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGNLGPSGTLSENGVVVCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGNGSALGAGDRNMVRNLFGAYSRHMESNGSITTNKRQRLPYSPAELAAMGVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDSNLQQALVQLTFHQLVCSEEGDHLATRLISALMEYYTGPDGRGTVDDISRRLRDGCPSYYKESDYKFFLAVEALERAAMTIDAEDKENLAREAFNSLSKVPESVDLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAYNDEIDETVREQALAQREQCYEIIISALRSLKGDTLQKEFGSPIRSSVSQSALDPASRKKYICQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRKPIQEVRAVTATTSPVGQSGAPMSSNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSTEGVPTLEQRCQYLSNAVLQAKNASNGDGLVGSARSSIDSGFLDLLEGKLAVLRFQIKIKEELESMASRSDALPSTSDSAQNGMVLEGSSTVDTNFANATREKAKELASDVKSITQLYNEYAVPFGLWEICLEMLYFANYSGDTDSSIVRETWVRLIDQAISRGGIAEACSVLKRVGPRIYPGDGAVLPLDIICLHLEKAGLERLNSGVESVGDEDVARALVSACKGAAEPVLNAYDQLLSNGAILPSPSVRLRMLRSVLVVLREWAMSVNSQRMGTSAAGHSLILGGGFSSERAVASQRARDKITSLANRYMTEVRRLALPQNQTEHVYRGFKELEESFISQHSFDRF 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02745 1484 PANTHER BNAC05G49530D PROTEIN 2 1481 - -
Cca09g02745 1484 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 874 1291 IPR007187 -
Cca09g02745 1484 Coils Coil 699 719 - -
Cca09g02745 1484 Gene3D - 893 1053 IPR042533 -
Cca09g02745 1484 MobiDBLite consensus disorder prediction 440 462 - -
Cca09g02745 1484 Gene3D - 530 882 - -
Cca09g02745 1484 Pfam Nup133 N terminal like 54 542 IPR014908 -
Cca09g02745 1484 Gene3D - 1179 1418 IPR042538 -
Cca09g02745 1484 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 1481 IPR004870 GO:0005643|GO:0006913|GO:0017056
Cca09g02745 1484 Gene3D Nucleoporin, helical domain, central subdomain 1056 1153 IPR042537 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02745 Cca-Chr9 53150726 53160312 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02745 09 53150726 53160312 Cca09g02745 09 53150726 53160312 ECH