Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02743 ATGATGGAGTCGAAGGGTCTGCGGTTCATAGCGTACCAATCAATATTCTCGAGAGTTGGATCTGGGGACTTTGATGGTGTTAAGAGAGTGGTGGAGCAAGTGAAGAAGGAAGATGCTTCATTGCTCTCTGATGTCATGTCTCTTCAGAACGATGCTGGAGAAACCGCGCTTTACATCGCTGCAGAGAATAATCTGTTAGAGATTTTCAGGTTCTTGCTCAGCTTGTGTGACTTTGACGTCGTCAAGATTCGCTCCAAGTCTGACATGAACGCTTTTCATGTTGCTGCCAAACGTGGCCATCGAGATATTGTGAGGGAGCTTTTGAATACTTGGCCTGAGGTCTGTAAATTATGCGACTCGTCAAACACCAGTCCTCTGTATTCTGCTGCAGTTCAAGACCACTTGGATGTGGTGAATGCTATCTTGGATGTCGATGTCAGTACCATGTTCATAGTCAGGAAAAATGGCAAAACTTCATTGCACAATGCTGCTAGATATGGCGTTGTTCAAATTGTAAAAACGCTTATTGCTCGGGATCCAGGAATAGTATGCATCAAAGATAAAAAAGGTCAAACTGCACTGCATATGGCTGTCAAAGGACAGTGTACTGCAGTGGTGGAGGAGATATTACTAGCTGATCCTTCTATATTGAATGAGCGAGATAAGAAGGGTAATACAGCTCTTCATATGGCTACAAGGAAAGGCCGTTCACAGATAGTGAACCTTTTGCTGAGCTATTCGGCTGTGGATGTTAATGCCATCAATAAGCAGCAGGAAACGGCCTTGGATTTGGCTGATAAACTGCCATATGGAGATTCAGCTTTGGAAATCAAGGAAGCCCTTGCAGAATATGGTGCTAAGTATGCCAGGTATGTTGGTAAAGTAGATGAAGCAATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTTATACAGAATGAGAAGACTCGCCGACGCGTATCTGGTATTGCCAAGGAGTTGAAGAAACTTCATAGAGAAGCGGTTCAAAACACCATTAATTCTGTGACAGTGGTTGCTGTCCTTTTTGCCTCAATAGCATTCTTGGCCATCTTCAATTTGCCGGGTCAATATATAACGGAAGGACCAGAGGCTGGAGAAGCTAATATAGCCTCTCATCATCATGTTGGTTTCCAAGTtttctgctttctgaattctacatctcttttcatttctctttcAGTTGTTGTAGTACAAATCACTTTGGTAGCCTGGGACACAAGGGCTCAAAAGCAGCTTGTGTCTGTGGTTAACAAGTTGATGTGGGCTGCATGTGCATGCACATGTGGTGCTTTTCTAGCAATAGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATCACCATCACCCTTCTGGGAGCACCAATTCTTGTTGGCACTCTAGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTCGGTATTTTCCGCAGCGATTCCCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCTTTCTCATGGTCTTACTCAGCAAATATATCAGATTTGGATGAATATAATTCTGACATTGAGAAGATATATGCCTTGTGA 1593 0.4218 MMESKGLRFIAYQSIFSRVGSGDFDGVKRVVEQVKKEDASLLSDVMSLQNDAGETALYIAAENNLLEIFRFLLSLCDFDVVKIRSKSDMNAFHVAAKRGHRDIVRELLNTWPEVCKLCDSSNTSPLYSAAVQDHLDVVNAILDVDVSTMFIVRKNGKTSLHNAARYGVVQIVKTLIARDPGIVCIKDKKGQTALHMAVKGQCTAVVEEILLADPSILNERDKKGNTALHMATRKGRSQIVNLLLSYSAVDVNAINKQQETALDLADKLPYGDSALEIKEALAEYGAKYARYVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYITEGPEAGEANIASHHHVGFQVFCFLNSTSLFISLSVVVVQITLVAWDTRAQKQLVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITLLGAPILVGTLASMCYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSANISDLDEYNSDIEKIYAL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02743 530 Pfam Domain of unknown function 339 448 IPR026961 -
Cca09g02743 530 ProSiteProfiles Ankyrin repeat region circular profile. 155 176 - -
Cca09g02743 530 SUPERFAMILY Ankyrin repeat 16 286 IPR036770 -
Cca09g02743 530 Coils Coil 319 339 - -
Cca09g02743 530 ProSiteProfiles Ankyrin repeat profile. 223 248 IPR002110 GO:0005515
Cca09g02743 530 Gene3D - 21 149 IPR036770 -
Cca09g02743 530 Gene3D - 150 305 IPR036770 -
Cca09g02743 530 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3 530 - -
Cca09g02743 530 ProSiteProfiles Ankyrin repeat profile. 155 176 IPR002110 GO:0005515
Cca09g02743 530 ProSiteProfiles Ankyrin repeat region circular profile. 223 248 - -
Cca09g02743 530 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 3 530 - -
Cca09g02743 530 SMART ANK_2a 155 184 IPR002110 GO:0005515
Cca09g02743 530 SMART ANK_2a 121 151 IPR002110 GO:0005515
Cca09g02743 530 SMART ANK_2a 52 82 IPR002110 GO:0005515
Cca09g02743 530 SMART ANK_2a 223 253 IPR002110 GO:0005515
Cca09g02743 530 SMART ANK_2a 87 116 IPR002110 GO:0005515
Cca09g02743 530 SMART ANK_2a 189 218 IPR002110 GO:0005515
Cca09g02743 530 Pfam Ankyrin repeats (3 copies) 189 253 IPR002110 GO:0005515
Cca09g02743 530 Pfam Ankyrin repeats (3 copies) 57 143 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02743 Cca-Chr9 53131989 53135633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02743 2 530 Miscellaneous Gene Families AT2G01680 68.460 0.0 728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02743 09 53131989 53135633 Cca09g02743 09 53131989 53135633 ECH