Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02740 ATGAAATTGGGTTTGAAGCTTCTGCAAGAGAGAGCCAAAGTTGGATCCTTTTGGTGGCCATATATCAGCAATCTTCCACAAACATATACTCTGCCTATTTTCTTTCCAGGGGAGGATATTAAGAACTTGCACTATGCTCCTCTTCTTCATCAGGTTAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTTAAGCGTGCCTTAGTAAGTCTTTCACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCGGTCTCATCTAGAGCATTCCGGTTGTATGGTGAAAAGGATCCCAATGGGATACGCATTGACATACCCATGATGCTCCCTCTAATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGATACCAGTAGCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACATCAATCAAAGAAGATGATCCTTTGTTACTTTGCTATGGCTGTTTAAGCAATGATCTTTTTCTTCTTGATTATGGATTTGTGATGCACTCAAATCCTTATGATTGTGTTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCGACACCTGCTCCATGGCAGGAACTGATCTTATCTCAGCTGAATCTAGCTGGAGAAACTCCAGATCTAAAGGTGAGCTTAGGTGGTCAAGAAATAGTAGAAGGCCGCTTGTTGGCTGCATTGAGAGTACTCCTCTCAAGTAATATGGAAACTGTGCAGAAGTATGACCTCAACACACTCCAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATAGCTGTATTCCGCACCCTAATTGCTTTGTGTGTCATTGCACTGGGCCACTTTCCCACCAAAATAATGGATGATGAGTCATTGTTGAAGCAGGGTGCATCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATCTGTGATAATAGACGTAATGAAAAATCTTTCAAGGAGGGTAAAGCTTCTGTCGTCAAAGGAAACAGCAACTGCCGAAGGCTAA 1095 0.4219 MKLGLKLLQERAKVGSFWWPYISNLPQTYTLPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALVSLSPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDPNGIRIDIPMMLPLIDMCNHSFNPNARIVQEQDTSSMKMQVKVVAETSIKEDDPLLLCYGCLSNDLFLLDYGFVMHSNPYDCVELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQEIVEGRLLAALRVLLSSNMETVQKYDLNTLQSLDAEAPLGVANDIAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKSVIIDVMKNLSRRVKLLSSKETATAEG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02740 364 CDD SET_LSMT 1 183 - -
Cca09g02740 364 Pfam SET domain 58 169 IPR001214 GO:0005515
Cca09g02740 364 Gene3D set domain protein methyltransferase, domain 1 1 183 - -
Cca09g02740 364 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 1 361 - -
Cca09g02740 364 PANTHER F21J9.27 1 361 - -
Cca09g02740 364 Pfam Rubisco LSMT substrate-binding 219 339 IPR015353 -
Cca09g02740 364 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 179 358 IPR036464 -
Cca09g02740 364 SUPERFAMILY SET domain 3 187 IPR046341 -
Cca09g02740 364 Gene3D - 218 361 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca09g02740 Rubis-subs-bind 7.6e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02740 09 53113376 53116735 Cca09g02740 09 53113376 53116735 ECH