Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02732 ATGGGTGACATGAAAGACAAGATGAAGGGGTTCATGAAGAAAGTCAACAACTCTTTCTCCTCTTCATCCTCCGGCAAATTCAAGGGCCAGGGTAGAGTCTTGGGTTCTTCTTCCAGTTCTATCCCCCTTaattccaatcctacccctcgccccattcccacgcccaaccctatttccaaacccaacacgagtcccaaacccTCGCCCCGCAAAACGGAGCAAAATAGAATCACAGAGGAGCCTCCCAAAGATGGTGCCTTTGACCCTTTCGATTCGTTGGTCACTAATTCCAACAGATCACAAAATGGGTATTCACTGAACGTCTATGAATGCCCCGTTTGTAAACAACCCTTTAGATCCGAAGAGGAGGTGTCTGCACACGTGGAGGACTGTTTGAGTAGCCCTGGTGAGCGTGGAGGTGATGATGGAAACGGGGTCTCAGAGACTGAGAGTGAGGTTGTGTGTAATACTGAATTGGAGGTTTGTGTTGGTACTTACATTTCAGGGAAGCCATCTGAGGGATCGTTTGATGTTGTTCTCAAATTGTTGAGGAATATTGCTCGGGAACCTGAAAATGTCAAGTTTAGGAAGATCAGGATGAACAATCCCAAGATAAAAGAGGCTGTTGGTGATGTTGCAGGGGGGGTTGAGTTGCTGAGTTTTGTTGGTTTTGAACTCAGGGAGGAGAATGGAGAGACATGTGCCTTTATGGAGGTTCCCACAGAGGACCAAATCAAATTCATTAAGAAAGCAATAGTGTTGCTGGAATCGCAACTTGTACAAGAACCTCCGAAGAAGGAGGATTCGGTGTCTGCAACTTCTGCTGAGACGGGTGCAAAGGCTGAACCAAAGCCGGTTGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGCGTTGCTGCTAAAATTGAGCTACCAGATTCCTTCTACAACCTTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAATTACGGAGAAAAAAGCTTGCAGATTCTCAGCTTTTAATTCCCAAGTCCCTCAGAGAAAAGCAAGCAAAAGCTTCCAGGAAGAGATATTCAAAAACTATTATAAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCTTGGGAACCAACTACTGCTCTCTACGAGTTTGTCAGCTCATCATTAAAAGAACCAGGTTTAGAATTTGACCTAATGCATCCAGTACTTGTCCAACGGCGTGTGATCCCCCGTTTTCCAAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGACCTCGTACCTTCTGCTCTAATCAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGCTTAA 1386 0.4228 MGDMKDKMKGFMKKVNNSFSSSSSGKFKGQGRVLGSSSSSIPLNSNPTPRPIPTPNPISKPNTSPKPSPRKTEQNRITEEPPKDGAFDPFDSLVTNSNRSQNGYSLNVYECPVCKQPFRSEEEVSAHVEDCLSSPGERGGDDGNGVSETESEVVCNTELEVCVGTYISGKPSEGSFDVVLKLLRNIAREPENVKFRKIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETCAFMEVPTEDQIKFIKKAIVLLESQLVQEPPKKEDSVSATSAETGAKAEPKPVDRQVKVFFAVPESVAAKIELPDSFYNLSAEEVRREAELRRKKLADSQLLIPKSLREKQAKASRKRYSKTIIRIQFPDGVVLQGVFAPWEPTTALYEFVSSSLKEPGLEFDLMHPVLVQRRVIPRFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02732 461 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 460 - -
Cca09g02732 461 SUPERFAMILY Ubiquitin-like 322 434 IPR029071 -
Cca09g02732 461 ProSiteProfiles UBX domain profile. 350 434 IPR001012 GO:0005515
Cca09g02732 461 MobiDBLite consensus disorder prediction 15 45 - -
Cca09g02732 461 SUPERFAMILY PUG domain-like 170 257 IPR036339 -
Cca09g02732 461 Gene3D - 168 256 - -
Cca09g02732 461 SMART PGNneu 174 241 - -
Cca09g02732 461 MobiDBLite consensus disorder prediction 46 64 - -
Cca09g02732 461 CDD PUB 167 252 - -
Cca09g02732 461 Gene3D - 344 437 - -
Cca09g02732 461 MobiDBLite consensus disorder prediction 72 86 - -
Cca09g02732 461 Pfam PUB domain 173 246 IPR018997 -
Cca09g02732 461 MobiDBLite consensus disorder prediction 131 150 - -
Cca09g02732 461 Pfam UBX domain 350 430 IPR001012 GO:0005515
Cca09g02732 461 MobiDBLite consensus disorder prediction 15 101 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02732 1 382 C2H2 Transcription Factor Family AT2G01650 56.784 1.01e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g02732 UBX 2.6e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02732 09 53026144 53030559 Cca09g02732 09 53026144 53030559 ECH