Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01687 ATGATTGGAACTAAAGATCGTGTTGCCGACTCTGATGGCGAGAATTCCAGGAGCAAGCTTTCAAGGCGAAATTTTGAGCCTGGAAAGGAGTACCCAGATGAGAAAGGTGTTGAATTTCTGAGAGATTCAGAGGTGGGTGTTGGTGGCGATGGGGTTCTTCGCTCAAAACCCACCAAGGTTGTTGTTGGCACCTCAGGGTTGCAAGAGTTGACTCTCAGCTACCTCTGTGACAACCCAAAATTGAGTCTTGCTGAGAGAGAGAATTCTGGTAAAAGCTTTCTGAATTCCTCGGAGAAAATGAGCCACAAAGGGAAAGAGGTTGTGGTCTGTGACAATTCGAATCCGGATGGGAAATGGGTGGAAAGAGATTTCCTTAGCTTGAGTGAGCCAAGGGAGGATTCTTCAAAGAGATCCCTTGAGGATGTTGGTGAGAGGGAGAGTAATAGGGAGAAGAAGCCAAAACTGGAGACACTCAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACAGCTTCAAACGCTTTGCAAAATGGTGATCAACCTGTTAGGACTAAACCTTGCAGGCCATCCACTACTCACAACTCATATTCCAATGACTACACAGCAGCTTCTTTGTCTTACTCTTATTCCCACCCCTACTCACACAACCCAAGCTGCTCACTTACCCGCAATTCAACCGACAATTTTGAGTATTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGTACTAATGGGTCTGTGCATAGCAGGTTCAAGCCAATTGGAGATGGGGTTACTTTGTCCAGTCATGGTGCTGGTATTAGCTCCTTTATGCAAGGTAATAGTCAATATAATAAAACTACTAGTTCAGATAATCATTCATTTTTCCCTTCAGAGTTGCCTGCCAGGCCTAGGTTTGAGGCTCAGTCAGGGGACTCAAGGGGAAGGAATTCTGAGAATCTGAGAATCTTGGAAAGTTTGGATGATGGGAAGGTGAAGAAGCTCTCCAGACCAGAGAGAATTGTTATGGAAATTGTTTCAGAGTCTGTCTCTTTTATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTGAAGAATCTCATTGAGAGGCCTGAGAAGAAAGAGGAATTGGTAAGCCTCCAAAACCGGCTTGAGAGAAGATCTGACCTTACAAAGGAGAGTCTTTTAAAGTGCCATAAAGTACAATTAGAGGTTTTATTGGCTGTCAAAATGGGGCTTGCTAGCTTCCTATCTAGCAAAGTTCACTTGCCTGAGATGGTAGAGATTTTCTTGTATAAGAGATGTAGGAACGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGGAATAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTGTGTTTGAACTTTGATTGTGCAAGTAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCCCATTGGTGCCATGCTACCTGTGGCCTTCAGAAGAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGACCTTCAGGGACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCTTCGGAAATGTTTGGTTTCGTTAAAGATGTGTTCCTGTGTTGTGCAAAGGATTGGGGTATCGAAACCTTGATGAAAGAGCTTGACTGTGTATGGAGGATCTTTAGGGCTAGTGAAGATCGCAAAGGGAAGGAGTTGCATGTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAAAATGATATCTCCTGTGGATGCCTGCAATTACATCATGCAATTTTTCAACTGTAAGTGTCTTGATTGTGGTCTTTTCAATTCATATTAA 1863 0.4337 MIGTKDRVADSDGENSRSKLSRRNFEPGKEYPDEKGVEFLRDSEVGVGGDGVLRSKPTKVVVGTSGLQELTLSYLCDNPKLSLAERENSGKSFLNSSEKMSHKGKEVVVCDNSNPDGKWVERDFLSLSEPREDSSKRSLEDVGERESNREKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRTKPCRPSTTHNSYSNDYTAASLSYSYSHPYSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVTLSSHGAGISSFMQGNSQYNKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRILESLDDGKVKKLSRPERIVMEIVSESVSFMALTIQELTDDVIASTKEYLKNLIERPEKKEELVSLQNRLERRSDLTKESLLKCHKVQLEVLLAVKMGLASFLSSKVHLPEMVEIFLYKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGLQKNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLCCAKDWGIETLMKELDCVWRIFRASEDRKGKELHVKTDDMLLKLQTKMISPVDACNYIMQFFNCKCLDCGLFNSY 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01687 620 CDD PHD_OBE1_like 471 530 - -
Cca09g01687 620 PANTHER PROTEIN OBERON 3 1 611 - -
Cca09g01687 620 MobiDBLite consensus disorder prediction 1 36 - -
Cca09g01687 620 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 551 570 IPR004082 -
Cca09g01687 620 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 354 376 IPR004082 -
Cca09g01687 620 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 478 498 IPR004082 -
Cca09g01687 620 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 432 453 IPR004082 -
Cca09g01687 620 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 393 408 IPR004082 -
Cca09g01687 620 MobiDBLite consensus disorder prediction 175 197 - -
Cca09g01687 620 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 611 IPR004082 -
Cca09g01687 620 MobiDBLite consensus disorder prediction 130 154 - -
Cca09g01687 620 Pfam PHD - plant homeodomain finger protein 441 564 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01687 Cca-Chr9 41024504 41028681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01687 441 538 PHD Gene Family AT5G57380 29.592 4.13e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01687 09 41024504 41028681 Cca09g01687 09 41024504 41028681 ECH