Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01685 ATGGGGTGGTTCAACATGGGGTTGCTCTTCTTTTCTTCCATGCTTTTTGCTTTGGCCTCTGCCTCCTCCAGAAACTTGCCCATCATACCCTTTGATGAAGGCTATGCGCCCTTGTTTGGGGACAGTAACTTGGTCATCCATAGGGATGGCAAATCGGTTCATCTTTCTCTGGATGAAAGAACAGGTTCAGGATTTGTGTCTCATGATCTTTACCTTCACGGCTATTTCAGCGCTTCCATTAAGTTGCCTGCTGATTACACTGCCGGAGTTGTGGTTGCCTTTTATATGTCAAATGGTGACATGTTCCAAAATAACCATGATGAAATCGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATGTTTATGGCAACGGTAGCACCAACATTGGCAGAGAGGAAAGATATGGTCTCTGGTTTGACCCAGCCGATGATTTCCATCAGTACAGTATTGTCTGGACAGATTCTCAGATCATATTTTATGTGGATAATGTTCCTATTAGAGAAGTGACGCGAACCGAATCTATGGGAGGAGATTTCCCCTCTAAGCCAATGACTTTGTATGCAACAATATGGGATGCATCTGATTGGGCCACCAATGGAGGCAAATACAGGGTCAACTACAAGTATGCACCCTACGTTGCTGAATTCTCTGACCTTGTCCTGCATGGTTGTGCAGTGGATCCAATTGAGCACGTGGCCAAGTGTGACAATGCTGAAGCAATTCCTTCTAGTGTTACACCTGCACAGAGAATCAAAATGGAGAGTTTCAGGAAGAAGCACATGACATACTCCTACTGCTATGACAAAGTTAGATACAAAAGCCCTCCATCAGAGTGTGTGATCAATTCCCAAGAAGCTGAGAGGCTGAGAAAGTTTGATCCTGTCACTTTTGGTAGTGGCCGGCGTCACCATGGTAAAAGACACCGTCACAGCAGAGGAAGCCAGACAGAAGCTGCTTCATTTTAA 987 0.4498 MGWFNMGLLFFSSMLFALASASSRNLPIIPFDEGYAPLFGDSNLVIHRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTNIGREERYGLWFDPADDFHQYSIVWTDSQIIFYVDNVPIREVTRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDNAEAIPSSVTPAQRIKMESFRKKHMTYSYCYDKVRYKSPPSECVINSQEAERLRKFDPVTFGSGRRHHGKRHRHSRGSQTEAASF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01685 328 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Cca09g01685 328 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 307 IPR044791 GO:0004553
Cca09g01685 328 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 251 286 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca09g01685 328 MobiDBLite consensus disorder prediction 299 328 - -
Cca09g01685 328 PIRSF EndGlu_transf 1 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca09g01685 328 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 7 307 - -
Cca09g01685 328 CDD GH16_XET 29 286 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca09g01685 328 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 289 IPR013320 -
Cca09g01685 328 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 223 IPR000757 GO:0004553|GO:0005975
Cca09g01685 328 Gene3D - 16 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01685 Cca-Chr9 40969228 40972011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01685 1 325 Glycoside Hydrolase AT1G14720 65.559 2.62e-167 467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01685 09 40969228 40972011 Cca09g01685 09 40969228 40972011 ECH