Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01670 ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTACTATGAACCCTTCAGAGGGGGACATCTTGGTCTGCAGCTCATGCCTGGAATGAATGATCGAGACACAAAGCCATTTTTGCCTGGTCGTGATCCTCCTATGTTAATGGGTGCAAATGGAACTTTTCACCCACGGGATTGTGTTGTTTCCGAAGCATCAATTCCATTGAATTATGTCAGAGATAATTGGATAAGCCAGAGGGATAGGTTTTTCAATATGCAGCCCCCAAATCCTAATTATACTGTTCTTCCAGAGACATCAGGAGCTCCTTCCTTGCAAATTATACAGCCACCTGATACATCAAGGGATGAGAAGGTGGATAGAGTTGAAGAGTTAGTTGTCAAAAAGGAAGCTGGTCAGCCGAAGAAAAGGCAAACTAGGGGTGCTCTGACTACCCCAAAAGCTAAGAAACCTAGGAAGCCAAAGGATAATAGCAATGTTTCAGTTCAACGTGTGAAGCCACCAAAGAAGACTATGGAGCTTGTTATTAATGGAATTGATATGGACATTTCTGGTCTACCCATTCCAGTTTGTTCGTGCACTGGGGCTCCTCAGCAGTGTTATCGTTGGGGCTGCGGAGGTTGGCAGTCGGCTTGTTGCACCACAAATGTGTCGATATATCCCTTGCCTATGAGCATGAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGTCAAGGTGCTTTTAAAAAGGTCTTAGAGAAACTTGCAGCTGAAGGTTATAATTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCCAGACATGGCACCAACAAGTTTGTCACGATCAGGTAG 837 0.448 MDDDVLNMPNWGYYEPFRGGHLGLQLMPGMNDRDTKPFLPGRDPPMLMGANGTFHPRDCVVSEASIPLNYVRDNWISQRDRFFNMQPPNPNYTVLPETSGAPSLQIIQPPDTSRDEKVDRVEELVVKKEAGQPKKRQTRGALTTPKAKKPRKPKDNSNVSVQRVKPPKKTMELVINGIDMDISGLPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01670 278 PANTHER - 1 278 IPR010409 -
Cca09g01670 278 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 278 - -
Cca09g01670 278 MobiDBLite consensus disorder prediction 96 165 - -
Cca09g01670 278 MobiDBLite consensus disorder prediction 96 110 - -
Cca09g01670 278 SMART GAGA_bind_2 1 278 IPR010409 -
Cca09g01670 278 MobiDBLite consensus disorder prediction 112 135 - -
Cca09g01670 278 Pfam GAGA binding protein-like family 1 278 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01670 Cca-Chr9 40717754 40719799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01670 1 278 BBR or BPC Transcription factor family AT2G01930 58.054 1.87e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Cca09g01670 GAGA_bind 6.5e-106 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01670 09 40717754 40719799 Cca09g01670 09 40717754 40719799 ECH