Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00227 ATGGGTTCCGAAGGATCCAGCGTCGTCGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGTATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGACGATATATACATGCAGTCTTGGACTGGGACTATCATCGGTCCCCCTGGTACTGTTCATGAAGGACGTATCTACCAGTTGAAATTGTTTTGTGGCAAGGATTATCCAGAGAATCCCCCATCTGTTAGATTTCAAACAAGGATTAACATGACATGTGTCAATCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGAAACGTGAGCGCACAATGGAAGACATTTTGATTCAATTGAAGAAAGAAATGATGTCTCCACAAAATCGGAAGCTAACTCAACCTCCTGAAGGCAATGAAGAAGCCAGGATTGATCAGAAGGGGCTGGTGGTGAGATGTTGTATTGTGTGA 480 0.4354 MGSEGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPENPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWKRERTMEDILIQLKKEMMSPQNRKLTQPPEGNEEARIDQKGLVVRCCIV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00227 159 Pfam Ubiquitin-conjugating enzyme 41 134 IPR000608 -
Cca06g00227 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 8 144 - -
Cca06g00227 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE 8 144 - -
Cca06g00227 159 Gene3D Ubiquitin Conjugating Enzyme 2 144 IPR016135 -
Cca06g00227 159 SMART ubc_7 14 158 - -
Cca06g00227 159 SUPERFAMILY UBC-like 9 142 IPR016135 -
Cca06g00227 159 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 159 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00227 Cca-Chr6 5631647 5643165 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00227 06 5631647 5643165 Cca06g00227 06 5631647 5643165 ECH