Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00225 ATGATGCTCCGAAGCCTCTGGAAACGTCGTCGTCACCCACATTGGAGTCCCACGTTCCTGTGCTCCTCACCCGCTTCACTCTTTCACAGCGCCACCTGCGCCCTCGCGAGGCGACACTTCGTCTCCAACGAGGTGGAGGCTCCTGGTTGGAGGTGGAGCACCGAAGAGCCCTCGGGTTTCGTGGACGACGACGTTTCGCATCCTTGGCCCGAGTGGGTCCAGCTCATGAAGTGCTTGCTCGACAAGGGACACTTCAATCACCAAGAGGGAAACCCGTTTCGCAATGCTGGTTTCGGCGCCAAAGATTGCAATGTCGTTAGAACCGCTTGTCTTAATTTCGGTAGAGACCACTTTCACCTTTTGAGATTCTTGTCTCGAAAAGATATAGGAGTTACTGTGGCACTTGGATGTCCGAGCTTAGATAGGAAAGTGATCAACTCAGGAAAGCGTTTGAGAGCATATGCGGGTATTGATGAGGGAAATGTATGCAGTTTGTGCAATTTGAGGGGGGACTGTGAAAGGGCATTTGTGAAGGCACGAGAAGATGAAGGTGGAAGAACAGTGGATGTAATGCGTATTATTTTGACTTATGGGCTTGATCCAATTATTGGTTCAGTGGAAAACAAACCGTGTCTAACTAAAAGGGTGGAAGACTCTGTGAGAAGACTGCTGAAAGAAATAACAGAGCACAGTACTAAAGAGGAAAATTCTAATTTTTCAGACACCACAGAGGCTGTCATTGAACATGTTCATCCCAATCAGCAGGACAAGGGAAAAATAGATGTTTCAATGATGAAGCAAGGCGACTGGATTTGCCCCAAATGCAATTTCATGAACTTTGCTAGAAACATCAGGTGCTTACGATGTGACAGCTTGTTTGAGGAAAAAATCAAGCAATTGAAGGAGGATAACAATCACCTACCTTTGAAGAAGGGAGACTGGATATGCAATAAATGCAATTTCCTGAATTTTGCAAAGAATACAAGATGTTTGCAATGCAAAGAGAGGCCTTCCAATCGTCACCTTAATCCTGGGGAGTGGGAATGTGACTCATGCAATTACCTCAATTTCAGAAGAAACATGGTTTGCCTGAAATGTGACCATAGACGGCCTATAGTGTCAAGGGCTTCAAAATCTTCTCTTCAACCTCAGCAAGAAGATATAGACCACTATAAGAATAGCAAATTTGCTTTTGTGGCACATCAGGGTGATAGAAGTTATGAAACACCAATGATTTTTGGAAGAAAGAACAGGAACAGAGATTCACACATGTGGAGATTTGTAGAGGATAGAAATGAAAATCACGAGTGCTTAAATAAATCAAATGATCCTTCTGACTTTGTGGATTTTCCTATTGTTGGAGGTAAGACTCAATTGACTGAGGTACAAAGGAGAGAAGCATACAAGACTGAGTTGCCAAATCAGTTCAGAAGGCCTTCATGGCAAAGTGAAACTGATGATGAGTTTTGTTCAGATAGCCTGAGTACTGATGATGAATTTTGTTCTGACAATAACCAGAGTACTGATGATGAAGAAATGGACGAATGGTTTGGAAAAGGTAAGATTGAAAGGTAG 1575 0.4362 MMLRSLWKRRRHPHWSPTFLCSSPASLFHSATCALARRHFVSNEVEAPGWRWSTEEPSGFVDDDVSHPWPEWVQLMKCLLDKGHFNHQEGNPFRNAGFGAKDCNVVRTACLNFGRDHFHLLRFLSRKDIGVTVALGCPSLDRKVINSGKRLRAYAGIDEGNVCSLCNLRGDCERAFVKAREDEGGRTVDVMRIILTYGLDPIIGSVENKPCLTKRVEDSVRRLLKEITEHSTKEENSNFSDTTEAVIEHVHPNQQDKGKIDVSMMKQGDWICPKCNFMNFARNIRCLRCDSLFEEKIKQLKEDNNHLPLKKGDWICNKCNFLNFAKNTRCLQCKERPSNRHLNPGEWECDSCNYLNFRRNMVCLKCDHRRPIVSRASKSSLQPQQEDIDHYKNSKFAFVAHQGDRSYETPMIFGRKNRNRDSHMWRFVEDRNENHECLNKSNDPSDFVDFPIVGGKTQLTEVQRREAYKTELPNQFRRPSWQSETDDEFCSDSLSTDDEFCSDNNQSTDDEEMDEWFGKGKIER 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00225 524 ProSiteProfiles Zinc finger RanBP2 type profile. 266 295 IPR001876 -
Cca06g00225 524 SUPERFAMILY Ran binding protein zinc finger-like 303 336 IPR036443 -
Cca06g00225 524 PANTHER ZINC FINGER PROTEIN 64 289 - -
Cca06g00225 524 PANTHER ZINC FINGER PROTEIN 287 521 - -
Cca06g00225 524 ProSitePatterns Zinc finger RanBP2-type signature. 270 289 IPR001876 -
Cca06g00225 524 SUPERFAMILY Ran binding protein zinc finger-like 264 291 IPR036443 -
Cca06g00225 524 ProSitePatterns Zinc finger RanBP2-type signature. 347 366 IPR001876 -
Cca06g00225 524 SMART zf_4 268 292 IPR001876 -
Cca06g00225 524 SMART zf_4 312 336 IPR001876 -
Cca06g00225 524 SMART zf_4 345 369 IPR001876 -
Cca06g00225 524 ProSitePatterns Zinc finger RanBP2-type signature. 314 333 IPR001876 -
Cca06g00225 524 Pfam Zn-finger in Ran binding protein and others 266 291 IPR001876 -
Cca06g00225 524 Pfam Zn-finger in Ran binding protein and others 345 367 IPR001876 -
Cca06g00225 524 Pfam Zn-finger in Ran binding protein and others 310 334 IPR001876 -
Cca06g00225 524 MobiDBLite consensus disorder prediction 470 524 - -
Cca06g00225 524 ProSiteProfiles Zinc finger RanBP2 type profile. 310 339 IPR001876 -
Cca06g00225 524 SUPERFAMILY Ran binding protein zinc finger-like 337 371 IPR036443 -
Cca06g00225 524 Gene3D - 260 292 - -
Cca06g00225 524 Gene3D - 301 338 - -
Cca06g00225 524 Gene3D - 339 372 - -
Cca06g00225 524 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 287 521 - -
Cca06g00225 524 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 64 289 - -
Cca06g00225 524 ProSiteProfiles Zinc finger RanBP2 type profile. 343 372 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00225 Cca-Chr6 5541057 5543987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00225 64 371 EF-hand Containing Proteins AT1G55040 39.514 5.78e-62 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00225 06 5541057 5543987 Cca06g00225 06 5541057 5543987 ECH