Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00219 ATGGACTCGAAGGCCATGTGCTTCATAACGCACCAGGCCCTTTTCAACGCCGTTCGATGTGGGGACCTTGAAGGGATCAAGGAGCAGTTGCAGAACAAGGGTGAGTCCTCAACGGAGGTTATGTGCTTGCAGAACGATGCGGGGGAAACCATGTTGTATATAGCTGCTGAGCTTGGTCTTCGTGAGGTGTTCAGCTTCTTGCTTAGTTTGTGTGACGTGGAGGTGTTGAAGATCAGGTCCAAATCGGATATGAGCCCCTTTCACGTTGCAGCCAAACGTGGCCATTTGGATATTGTGAGGGAGATTTTAAGTACTTGGCCTGAGGTTTGTAAGTTATGCGACTCCTCTGACACTAGCCCTCTATATTCAGCCGCTGTTCGAGATCATTTGGATATAGTGAATGCAATTTTGGATGTTGATATGAGCTCAATGATGATAGTAAGGAAAAATGGCAAAACAGCATTGCACAATGCTGCTAGATATGGCATCCTTCGCATTGTACAAGCATTGATTGCTCGAGATCCTGGAATAGTCTGCATCAAAGACAAAAAGGGTCAAACTGCACTGCATATGGCTGTGAAAGGACAGAGTACTTCGGTGGTGGAAGAGATACTACAAGCTGATCCTATGATATTGAACGAAATAGATAAGAAGGGTAGCACAGCACTTCACATGGCAACCAGGAAAGGCCGTTCACAGATAGTGAGCCTTTTGTTAACCTACACAGCTACGAATGTCAATGCCATCAATAATCAGAAGGAAACAGCCTTAGATTTGGCAGATAAACTGCCATATGGAGATTCATCTTTGGAAATCAAGGAGGCCCTTGCAGAATGTGGTGCCAAGCATGCCAGGCATATTGGGAAAGTGAATGATGCCATGGAACTAAAAAGAGCTGTGAGTGACATAAAGCATGAAGTGCAATCACAGCTTATACAGAATGAAAAAACTCGCAGACGAGTTTCTGGTATTGCTAAGGAACTGAAGAAAATTCATAGAGATGCAGTTCAAAACACCATAAATTCTGTCACAGTTGTAGCTGTCCTTTTTGGCTCAATAGCATTCATGGCTTTGTTCAGTTTACCTGGTCAATATCGAAAGAAGCAACCAGAGGCAGGGAAGGCGAATATAGCCGGTGATGTTGCCTTCAGTGTGTTCTGCCTTTTGAATGCTACAGCTCTTTTCATTTCTCTTGCGGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGATACAAGGGCTCAAAGGCAGGTTGTGTCAGTGGTTAACAAGCTAATGTGGGCTGCATGTTCTTGCACTTGTGGAGCTTTTCTTGCTATAGCCTTTGTGGTTGTTGGAGATGAAACATGGCTAGCTATTAGTGTCACCCTTTTGGGAGCACCAATTCTAGTTGGTACTCTAGCATACTTGTGCTACTTTGTTTTCAAGCGGCATTTCGGACCGCGCAGTGATTCCCAGAGATTAGTCAAGAGAGCAAGTGGAAGCAAGTCATTCTCATGGACTTACTCAGTAAATATATCAGATGTAGatgattatgattctgatcttgagaagatatatgctctataa 1569 0.4308 MDSKAMCFITHQALFNAVRCGDLEGIKEQLQNKGESSTEVMCLQNDAGETMLYIAAELGLREVFSFLLSLCDVEVLKIRSKSDMSPFHVAAKRGHLDIVREILSTWPEVCKLCDSSDTSPLYSAAVRDHLDIVNAILDVDMSSMMIVRKNGKTALHNAARYGILRIVQALIARDPGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPMILNEIDKKGSTALHMATRKGRSQIVSLLLTYTATNVNAINNQKETALDLADKLPYGDSSLEIKEALAECGAKHARHIGKVNDAMELKRAVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKIHRDAVQNTINSVTVVAVLFGSIAFMALFSLPGQYRKKQPEAGKANIAGDVAFSVFCLLNATALFISLAVVVVQITLVAWDTRAQRQVVSVVNKLMWAACSCTCGAFLAIAFVVVGDETWLAISVTLLGAPILVGTLAYLCYFVFKRHFGPRSDSQRLVKRASGSKSFSWTYSVNISDVDDYDSDLEKIYAL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00219 522 ProSiteProfiles Ankyrin repeat profile. 82 104 IPR002110 GO:0005515
Cca06g00219 522 SUPERFAMILY Ankyrin repeat 13 278 IPR036770 -
Cca06g00219 522 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 2 522 - -
Cca06g00219 522 ProSiteProfiles Ankyrin repeat region circular profile. 218 243 - -
Cca06g00219 522 Pfam Domain of unknown function 335 443 IPR026961 -
Cca06g00219 522 Gene3D - 4 342 IPR036770 -
Cca06g00219 522 ProSiteProfiles Ankyrin repeat region circular profile. 150 171 - -
Cca06g00219 522 Pfam Ankyrin repeats (3 copies) 116 173 IPR002110 GO:0005515
Cca06g00219 522 Pfam Ankyrin repeats (3 copies) 182 248 IPR002110 GO:0005515
Cca06g00219 522 ProSiteProfiles Ankyrin repeat profile. 150 171 IPR002110 GO:0005515
Cca06g00219 522 ProSiteProfiles Ankyrin repeat profile. 218 251 IPR002110 GO:0005515
Cca06g00219 522 ProSiteProfiles Ankyrin repeat region circular profile. 82 104 - -
Cca06g00219 522 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 2 522 - -
Cca06g00219 522 SMART ANK_2a 82 111 IPR002110 GO:0005515
Cca06g00219 522 SMART ANK_2a 184 214 IPR002110 GO:0005515
Cca06g00219 522 SMART ANK_2a 47 75 IPR002110 GO:0005515
Cca06g00219 522 SMART ANK_2a 116 146 IPR002110 GO:0005515
Cca06g00219 522 SMART ANK_2a 150 179 IPR002110 GO:0005515
Cca06g00219 522 SMART ANK_2a 218 248 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00219 Cca-Chr6 5389882 5393947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00219 1 522 Miscellaneous Gene Families AT2G01680 65.918 0.0 706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00219 06 5389882 5393947 Cca06g00219 06 5389882 5393947 ECH