Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00218 ATGGCGGACGCGTCCTCGGTGATTCCCGCAGCCGTGCTTCGCAACCTTGCCGACAAGCTCTACGAGAAGCGCAAGAATGCTGCACTCGAGGTTGAGGGGATAGTGAAGCAGCTTTCTACGACTGGGGATCATGTTAAGATAACTGCTGTGATCAATTTGTTGACTACGGATTTTACTTATTCGCCACAAGCAAACCACCGCAAGGGAGGGTTGATAAGCTTAGCTGCTGCTACTGTTGGGTTGACTACTGAAGCTTCTCAGCATCTTGAGGAAATTGTACCACCCGTATTAAATTCTTTTGCCGATCAAGATAGCAGAGTTCGATATTATGCTTGCGAAGCATTGTACAACATAGCAAAGGTTGTGAGAGGAGATTTTATTATATTCTTCAATGAAATCTTCGATGCCTTGTGCAAGCTTTCTGCAGACTCAGATGCCAATGTTCAAAGTGCTGCTCATCTCTTAGATCGACTTGTGAAGGATATTGTGACTGAAAGTGATCAGTTCAGTATTGAAGAATTTATACCGTTGTTGAGGGAGCGCATGAATGTATTGAATCCTTATGTCCGTCAGTTTTTGGTAGGATGGATTACTGTATTGGACAGTGTTCCAGATATTGACATGCTGGGTTTTCTTCCTGATTTTCTTGATGGTTTGTTTAATATGTTGAGTGATTCAAGTCATGAAATACGTCAACAAGCTGATTCAGCTCTTTCTGAGTTTCTTCAAGAGATTAAGAATTCGCCATCTGTAGATTATGGTCGAATGGCTGAAATACTGGTACAAAGGGCAGGTTCTCCAGATGAATTTACTAGGTTAACAGCTATCACATGGATAAATGAGTTTGTCAAACTTGGTGGAGACCAGCTGGTCCCATATTATGCTGACATTCTTGGAGCTATTTTGCCTTGCATATCCGATAAGGAAGATAAAATTAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTACGTGCAATCAAGGCTGATCCAGTTGAAGCATTTGATGTAGGAGCAATCCTCTTCATTGCTAGGAGGCAACTATCTAGTGAATGGGAGGCTACTCGAATTGAAGCTTTGCACTGGATATCAACCCTTTTATACAGACATCGTAGTGAGGTTTTGACATTTCTGAATGACATATTTGATACCCTACTCAAAGCACTTTCAGATCCATCTGATGAGGTTGTGCTTCTAGTTCTTGATGTTCATGCGTGCATTGCAAGAGATCCCCACCACTTCAGGCAGCTTGTTGTTTTTCTAGTGCACAATTTCCGACTAGATAATTCTCTTTTGGAGAAGCGTGGTGCTTTGATAATCCGTCGCCTTTGTGTTCTTTTGAACGCAGAGAGAGTCTACCGTGAACTTTCTATAATATTAGAAGGAGAATCTGATTTGGATTTTGCGTCAATTATGGTTCAGGCTTTGAATTTGATCTTAATTACATCATTGGAATTAGCTGAGATCCGAGATCTTTTGAAGCAATCACTGGTAAATCCGGCCGGGAAGGACTTGTATGTTTCTCTGTATGCTTCTTGGTGTCATTCTCCAATGGCAATCATAAGTCTTTGCTTCTTAGCTCAGACTTACCAACACGCCAGTTCAGTGATTCAATCACTGTTGGAGGAGGATATCAATGTCAAATTATTGGTCCAACTAGATAAATTGATTCGCTTGATGGAAACTCCAATCTTTGCTTATCTTCGATTGCAGCTTCTTGAACCTGAAAGACATATTTGGTTATTCAAGGCATTGTATGGTCTTCTGATGTTGCTTCCTCAGCAAAGTGCCGCCTTTAAAATACTAAAAACTCGTTTAAAAGCTGTGCCATCGTATTTGTTCGATTGTGAGCGATTGAGGAGACCGCCTTCAGGGGATCCCCACCAATTTCTTCATAACATGCCCGATGGATTTCAAGCCATTGAGGATGGTGACGTAACTGAAGATGTTGTGAACTCACATAATGGAATAAATTTTGCTGCAAGGCTACAACAGTTTCGGGAAATGCAGCACCAACATCAGGTGCTTGCCAAAACACAGGCAAAGTCACGCAATATTTCCACTTCATCGTCAAAGGAGGCACAAAGAGAGGAAGAACCAAGAAGACCTCAGTCTATTGAACGTAATGTTCCTCCTTCAAGATCATCAAAGAGAGGTCCAGGGTAG 2163 0.4189 MADASSVIPAAVLRNLADKLYEKRKNAALEVEGIVKQLSTTGDHVKITAVINLLTTDFTYSPQANHRKGGLISLAAATVGLTTEASQHLEEIVPPVLNSFADQDSRVRYYACEALYNIAKVVRGDFIIFFNEIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAGSPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEDKIRVVARETNEELRAIKADPVEAFDVGAILFIARRQLSSEWEATRIEALHWISTLLYRHRSEVLTFLNDIFDTLLKALSDPSDEVVLLVLDVHACIARDPHHFRQLVVFLVHNFRLDNSLLEKRGALIIRRLCVLLNAERVYRELSIILEGESDLDFASIMVQALNLILITSLELAEIRDLLKQSLVNPAGKDLYVSLYASWCHSPMAIISLCFLAQTYQHASSVIQSLLEEDINVKLLVQLDKLIRLMETPIFAYLRLQLLEPERHIWLFKALYGLLMLLPQQSAAFKILKTRLKAVPSYLFDCERLRRPPSGDPHQFLHNMPDGFQAIEDGDVTEDVVNSHNGINFAARLQQFREMQHQHQVLAKTQAKSRNISTSSSKEAQREEEPRRPQSIERNVPPSRSSKRGPG 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00218 720 Gene3D - 1 248 IPR011989 -
Cca06g00218 720 Gene3D - 249 409 IPR011989 -
Cca06g00218 720 ProSiteProfiles HEAT repeat profile. 92 127 IPR021133 -
Cca06g00218 720 MobiDBLite consensus disorder prediction 690 704 - -
Cca06g00218 720 Pfam Vacuolar 14 Fab1-binding region 65 161 - -
Cca06g00218 720 Pfam Vacuolar protein 14 C-terminal Fig4p binding 429 608 IPR021841 -
Cca06g00218 720 MobiDBLite consensus disorder prediction 676 720 - -
Cca06g00218 720 PANTHER PROTEIN VAC14 HOMOLOG 4 694 - -
Cca06g00218 720 PANTHER TAX1 BINDING PROTEIN-RELATED 4 694 IPR026825 GO:0006661|GO:0070772
Cca06g00218 720 SUPERFAMILY ARM repeat 10 552 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00218 Cca-Chr6 5349631 5368937 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00218 06 5349631 5368937 Cca06g00218 06 5349631 5368937 ECH