Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00216 GTTGAGCAAATGCGCAATGCTGGACTTATCAAAGGAGGTTCTCTAGAAAATGCCATTGTGTGTAGTGCCAGTAAAGGTTGGTTGAATCCACCTTTGCATTTCAGTGATGAACCATGTCGCCACAAGATCTTAGACCTTATTGGTGATCTCTCGCTGTTTGCTCAGTTTGGGAATCAAGGACTCCCAGTGGCACATATCGTAGCATACAAGGGTGGCCATGCATTGCATGCTGATTTGGCGCGCCGGCTGATGGGAATGATTTGA 264 0.4697 VEQMRNAGLIKGGSLENAIVCSASKGWLNPPLHFSDEPCRHKILDLIGDLSLFAQFGNQGLPVAHIVAYKGGHALHADLARRLMGMI 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00216 87 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 1 85 IPR004463 GO:0008759|GO:0009245
Cca06g00216 87 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 1 84 IPR004463 GO:0008759|GO:0009245
Cca06g00216 87 Gene3D lpxc deacetylase, domain 2 1 86 IPR011334 GO:0008759|GO:0009245
Cca06g00216 87 SUPERFAMILY Ribosomal protein S5 domain 2-like 1 84 IPR020568 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00216 1 83 Carbohydrate Esterase AT1G25054 79.518 8.88e-45 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00216 06 5299701 5315579 Cca06g00216 06 5299701 5315579 ECH