Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00213 ATGTCATCACAAACCGCCGCCACGGAGGCGCTGGACTCCCACGCGCCGCTGCTCCGCCCCCGCCACGACACCTCGCGGACTCCCGCGCTTGCGCTCCTCCTCGGGCGTGTCGGCCGCCGCGGGCCCTCCATGCTCGTGCGGGAGACGGCGGCGCGCGAGCTCGAGGAGCGCCGCGCCGACTGGGGCTACTCCAAGCCGGTGGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTCGTCGTCTCGGCGGCGATGCTAGCTTGCACCACCCACGAGAGCCCGAACACGCCGATCCGCGTCTGGATCATCGGCTACGCGCTGCAGTGCCTCGTACACGTGCTGCTCGTGTGGCTCGAGTACCGGCGCCGGAGCCGCCGGGAATCGCGCCGCGGCCAGAGGCCGCAGGACGTGGGGAGCGACGCTGGTAGCGACGCCGGCAGCGACGACGGAGATGGGAGCTCTGGAAGCTCGTCTCGCTCCAGATTCACTAAACGATGTGAATCATTAAATACTGGAGTTTCATTCCTCTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGATTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTGTTTTTTGCCATCTTTTGTGTTGTCTTGGCCTGCTTGATTGGCATTGCTCTTTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTGGCAGGACAGGAAGGCGCATCAGAAGCAGATCTTAGCTTACTTCCAAAATATAGATTTCAAATATTAAGCAATGAGGACAAGCCTAGTGGCGGAGCTGGATCAATGGTTCCCATAGAAACCAGCAGCGCTTACTTGGCAAATGAACGGACACTTTTACCCGAGGATGCGGAGTGCTGCATATGCCTGTGTTCATACGAGGATGGAGCAGAGCTCCATGCTCTTCCCTGCAACCACCATTTCCATTCTTCATGCATAGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAACGAACAAGTGTGA 1056 0.5691 MSSQTAATEALDSHAPLLRPRHDTSRTPALALLLGRVGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAAMLACTTHESPNTPIRVWIIGYALQCLVHVLLVWLEYRRRSRRESRRGQRPQDVGSDAGSDAGSDDGDGSSGSSSRSRFTKRCESLNTGVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSLLPKYRFQILSNEDKPSGGAGSMVPIETSSAYLANERTLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00213 351 Pfam Ring finger domain 299 341 IPR001841 -
Cca06g00213 351 PANTHER TARGET OF ERK KINASE MPK-1 10 351 - -
Cca06g00213 351 CDD RING-H2_PA-TM-RING 299 341 - -
Cca06g00213 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 346 IPR013083 -
Cca06g00213 351 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g00213 351 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 351 - -
Cca06g00213 351 SUPERFAMILY RING/U-box 288 345 - -
Cca06g00213 351 MobiDBLite consensus disorder prediction 129 160 - -
Cca06g00213 351 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Cca06g00213 351 SMART ring_2 300 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00213 Cca-Chr6 5247878 5254598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00213 12 350 C3H Transcription Factor Family AT1G68070 68.915 1.73e-175 489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00213 06 5247878 5254598 Cca06g00213 06 5247878 5254598 ECH