Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00210 ATGGCGATTGAAACGCTGGTGTTAGGCGCTGGTCAAGAAGTTGGGAAGAGCTGCGTGGTGGTAACCATCAACGGCAAGCGAATCATGTTCGATTGCGGAATGCACATGGGCTACTGCGACAATCGTCGTTACCCTGATTTTAGCCTCATCTCTCCTAATAACGATTTCAACGCTGCCCTCTCTTGCATCATCATCACTCACTTTCACTTGGATCATGTTGGCGCCTTGGCTTACTTCACTGAAGTTTGCGGGTATAATGGACCGATTTACATGACGTACCCGACAAAAGCTTTGGCTCCTCTTATGTTGGAAGACTATCGAAAAGTGATGGTTGATCGCCGGGGGGAGGAAGAGCTATTCTCTTCTGATCAAATTGCTGAGTGCATGAAGAAAGTTATTGCTGTTAATCTGAGGCAGACTGTACAAGTAGATGAAGACCTGCAGATACGAGCCTATTATGCAGGACATGTTATTGGAGCTGCAATGTTCTATGCAAAAGTGGGCGAAGCAGAAATGGTTTATACAGGAGACTACAATATGACACCAGATAGACACCTTGGAGCAGCTCAAATTGATCGATTACGACTTGACCTTGTTATAACTGAATCCACGTATGCAACTACAATACGTGACTCAAGATATGCTCGAGAGAGGGAATTCCTCAAAGCTGTTCATAAATGTGTATCTTGTGGAGGAAAAGTGCTTATTCCAACATTTGCACTTGGAAGAGCTCAGGAGCTATGCATTTTGTTGGAAGACCACTGGGAACGCATGAATTTGAAGGTTCCTATCTACTTCTCAGCAGGTTTAACAATCCAAGCGAATGCATATTATAAGATGCTTATTAGTTGGACAAGCCAGAAGATTAAAGATACATTCTCTATACATAATGCTTTTGACTTTAAGCATGCTCAAAAATTTGAAAGGTCTATGATAGACGCTCCTGGTCCTTGTGTTCTTTTTGCCACTCCTGGGATGATAAGCGGCGGATTTTCACTTGAAGTTTTTAAGCATTGGGCAGTGTCGGAAAATAACCTTGTCACTTTGCCTGGGTATTGCGTGGCTGGAACAATAGGTCACAAATTAATGTCAGATAAGCGGGACAAAGTTGATCTGGATCCTAATACAAAAATAGATGTGCGTTGCCAGGTTCATCAATTGGCTTTTAGTCCTCATACTGATTCTAAAGGGATAATGGATCTTGTAAAATTTCTCTCCCCGAAGCATGTTATACTAGTGCATGGCGAGAAGCATAAGATGGTTTCTCTTAAAGAAAAAATTCATTCTGAATTGGGGATTCAATGTTATGATCCTGCAAATAATGACACCATATGCATTCCTTCAACTCACTATGTAAATGCTGAAACCTCAGACGCTTTCATTCATAGCTGCTTGAATCCAAACTTCAAGTTTCAGAAATGCAGTTCAGTGGACATATGTAACTCTACTACGATAGACAGAAACTTAATGCCTGAGCTTCAAGTTGAAGATGAAAGGGTAGCAGAAGGAGTTTTGGTTGTGGAGAAAGGGAAAAAGGCAAAGATTGTACACCAGGATGAAGTTTTGCTTATGATGGGTGAAAAGAAACATGATGCTTAG 1599 0.4159 MAIETLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYCDNRRYPDFSLISPNNDFNAALSCIIITHFHLDHVGALAYFTEVCGYNGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSSDQIAECMKKVIAVNLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGEAEMVYTGDYNMTPDRHLGAAQIDRLRLDLVITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQELCILLEDHWERMNLKVPIYFSAGLTIQANAYYKMLISWTSQKIKDTFSIHNAFDFKHAQKFERSMIDAPGPCVLFATPGMISGGFSLEVFKHWAVSENNLVTLPGYCVAGTIGHKLMSDKRDKVDLDPNTKIDVRCQVHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKHKMVSLKEKIHSELGIQCYDPANNDTICIPSTHYVNAETSDAFIHSCLNPNFKFQKCSSVDICNSTTIDRNLMPELQVEDERVAEGVLVVEKGKKAKIVHQDEVLLMMGEKKHDA 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00210 532 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 1 531 - -
Cca06g00210 532 Pfam Beta-Casp domain 244 362 IPR022712 -
Cca06g00210 532 SMART Lactamase_B_5a 15 232 IPR001279 -
Cca06g00210 532 Pfam Metallo-beta-lactamase superfamily domain 21 191 IPR001279 -
Cca06g00210 532 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 1 531 - -
Cca06g00210 532 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 378 436 IPR011108 -
Cca06g00210 532 SMART Beta_Casp_2 244 362 IPR022712 -
Cca06g00210 532 Gene3D - 8 427 IPR036866 -
Cca06g00210 532 SUPERFAMILY Metallo-hydrolase/oxidoreductase 6 447 IPR036866 -
Cca06g00210 532 CDD INTS11-like_MBL-fold 6 203 IPR041897 -
Cca06g00210 532 Gene3D - 212 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00210 Cca-Chr6 5176002 5200165 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00210 06 5176002 5200165 Cca06g00210 06 5176002 5200165 ECH