Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00208 ATGGCGACCATGACGAGCTTGATCGGTCTCATTAACAAGATCCAACGCGCGTGCACCGTGTTGGGCGACCACGGCGGCGAGGGAATGTCCCTGTGGGAGGCGCTTCCCACCGTCGCGGTCGTCGGAGGACAGAGTTCAGGGAAATCGTCAGTGCTAGAAAGTGTCGTGGGAAGGGATTTTCTGCCACGTGGATCTGGTATTGTCACACGGAGGCCTCTAGAATATGCCGAGTTTCTTCATGCACCAAGAAAGAGATTCAGTGACTTTGCTGCTGTGAGACAGGAAATTTCAGATGAGACAGATCGTATAACCGGGAAGACAAAGGCAATTTCAAACATTCCAATTCAATTGAGCATATATTCTCCACATGTTGTGAACTTAACCCTCATTGACCTTCCTGGGTTGACTAAAGTTGCTGTAGAGGGACAATCAGAAACCATTGTTCAAGATATTGAGAGCATGGTCCGTTCTTATGTTGAGAAGCCTAATTGCATTATTTTGGCCATCTCTCCTGCAAACCAAGATATTGCCACTTCAGATGCAATAAAAATTGCAAGAGAAGTTGATCCTTCAGGTGAAAGGACATTTGGGGTATTGACAAAACTTGATCTTATGGATAAAGGAACTAATGCCGTTGAGGTTCTCGAAGGAAGGCAATACAGGTTGCAGCATCCTTGGGTTGGAATTGTCAATCGATCACAAGCTGATATTAATAGAAATGTTGACATGATTGTCGCTCGCAAGAAAGAGCGTGAATATTTTGAGACGAGCCCTGAATATGGACATTTGGCACATAAAATGGGTGCAGAATATCTTGCGAAACTTCTATCTGAGCATTTGGAGATTGTTATTAGGCAGAAGATACCTAGTATTATTGCCTTAATAAATAAAGCCATTGACGAGCTTAATGCAGAGTTGGACCGAATTGGCAGGCCAATAGCTGTGGATTCAGGGGCCAAATTATACACTATTTTACAGATGTGTCGGGCATTTGACAAAGTATTTAAAGAACACCTGGATGGAGGACGTCCTGGTGGGGACAGGATATATGGTGTTTTCGACCACCAATTACCAGCTGCTCTAAAAAAGCTTCCATTTAATCGTCATCTTTCCATAAAGAATGTCGAACGAATTGTTACAGAAGCTGATGGTTATCAGCCTCATCTAATTGCTCCAGAGCAAGGCTACAGAAGACTTATTGAGGGATCTATCACCTATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTCCACCTCATTTTGAAGGAGCTTGTACGGAAGTCTATTGCCGAAACTGTGGAATTGAAGAGGTTTCCAACCCTTCAAGCTGATATAGCTGCTGCTGCAAATGATGCCTTGGAACGATTCCGAGACGAAAGTAGGAGGACTGTGACCCGGATGGTTGATATGGAGTCTGGTTATCTAACAGTTGAATTTTTTCGGAAGATGCATCTTGAACCGGAAAAGAACGCAGAAAAGAACTCAGAAAAGAACCCAAATCGAAATACTCCTAATCCCAATGTGGACAGTTATATAGATAATCACCTCGGAAAAATAGGATCAAATGTTAATGGTTATATTAACATGGTTTGTGATACACTAAAAAATTCTATACCAAAAGCCGTGGTTTATTGTCAGGTTAGAGAGGCGAAGAGATCATTGCTCAACCATTTTTATGTTCAAGTTGGGAAAAGAGAG 1701 0.4297 MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLEYAEFLHAPRKRFSDFAAVRQEISDETDRITGKTKAISNIPIQLSIYSPHVVNLTLIDLPGLTKVAVEGQSETIVQDIESMVRSYVEKPNCIILAISPANQDIATSDAIKIAREVDPSGERTFGVLTKLDLMDKGTNAVEVLEGRQYRLQHPWVGIVNRSQADINRNVDMIVARKKEREYFETSPEYGHLAHKMGAEYLAKLLSEHLEIVIRQKIPSIIALINKAIDELNAELDRIGRPIAVDSGAKLYTILQMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFNRHLSIKNVERIVTEADGYQPHLIAPEQGYRRLIEGSITYFKGPAEASVDAVHLILKELVRKSIAETVELKRFPTLQADIAAAANDALERFRDESRRTVTRMVDMESGYLTVEFFRKMHLEPEKNAEKNSEKNPNRNTPNPNVDSYIDNHLGKIGSNVNGYINMVCDTLKNSIPKAVVYCQVREAKRSLLNHFYVQVGKRE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00208 567 PRINTS Dynamin signature 121 138 IPR022812 -
Cca06g00208 567 PRINTS Dynamin signature 35 53 IPR022812 -
Cca06g00208 567 PRINTS Dynamin signature 213 232 IPR022812 -
Cca06g00208 567 PRINTS Dynamin signature 190 206 IPR022812 -
Cca06g00208 567 PRINTS Dynamin signature 171 189 IPR022812 -
Cca06g00208 567 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Cca06g00208 567 PANTHER BNAA09G45430D PROTEIN 4 567 - -
Cca06g00208 567 Gene3D Dynamin, middle domain 315 567 - -
Cca06g00208 567 Pfam Dynamin central region 210 477 IPR000375 -
Cca06g00208 567 Pfam Dynamin GTPase effector domain 516 566 IPR003130 GO:0003924|GO:0005525
Cca06g00208 567 Pfam Dynamin family 38 201 IPR045063 -
Cca06g00208 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 297 IPR027417 -
Cca06g00208 567 ProSiteProfiles GED domain profile. 517 567 IPR020850 -
Cca06g00208 567 MobiDBLite consensus disorder prediction 489 513 - -
Cca06g00208 567 PANTHER DYNAMIN 4 567 IPR022812 -
Cca06g00208 567 SMART dynamin_3 4 240 IPR001401 GO:0003924|GO:0005525
Cca06g00208 567 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 289 IPR030381 GO:0005525
Cca06g00208 567 Gene3D - 4 298 IPR027417 -
Cca06g00208 567 CDD DLP_1 35 289 IPR001401 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00208 Cca-Chr6 5040893 5072891 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00208 06 5040893 5072891 Cca06g00208 06 5040893 5072891 ECH