Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00204 ATGGCCGCCTCGCTCCACACACCGCCGCATTCCGCCGCCGACAAGCCCTCCGCCGAGTTCCCCGCGGGGCTCCGGGTTCTCGTCGTCGACGACGACGCCACCACCTTGAGGATTATCGAGCAAATGTCTATACGCTGTCGTTACCGAGTTACCACGTGCACTGAGGCTACTGTTGCTTTAAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGATACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTTATTATGATGTCTGGTGATAGTACAACAAGTGCTGTCATGAAGGGAATCAGACATGGGGCCTGCGACTATTTGATTAAGCCTGTACGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGCTAGGAAAATCTTGAATGAAAATAAAGAACATGATCATTCTGGCAGCATGGAAGATAATGATCGGAATAAAAGGGGGAATGATGATACTGAATATACTTCTGCTGTTGATGCATCAGAAATAGTTAAAGCACCAAAAAAGAGGAGCAATTTAAAAGAAGAAGATGTTGAATTGGAGAGTGATGATCCAACTACATCTAAGAAGCCCCGTGTTGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTCTATTTGAAGCGATTAAGTGGAGTGGCACAGCAGCAGAATGGGATGCTAAACGCAGTTCCTGGGACTATAGAATCCAAGCTGGGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCTCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCCTAGGTTGCCCAGCAACTAACATAATGCCTACAGTGGACCAGACTGCTCTACTGCAAGCATCCATGCAGGGGCCAAAACATTCCCATTCTGAACATGCTGTAGCATATGGTCAACCTCTTGTAAAGTGTCCTTCCAACATTAACAAGAATTTCCCTCCATCTGGCTTAACTGTAAATGATACGTCATCTGGATATGGTGCATGGCCATCATCTAATAATACAATTGGTTCCGTGAGACCCAATACTAGTCTTGAAAGAGTGGGTATTCAGAATAACAACATGCTGATGGATATGTTAGagcaccaacaaaggcagcagcaccagcaaaaacaacagcgacagctgcagcagcagTCACTGATACATGATCAAAGTTGTTCAATCAATGTACAACCATCTTGTTTGGTGGTTCCCTCTCAATCTTCCGACACTTTCAAGGCAGTAAATAGTCCTGCTTCTGTCAATCAGGATTGCAGTTTTGGCAGGAATGCCGCTATTGATTATAGTCTATTTTCACAGAAATCAAATTATTCATTGATTGCTTCTCAATTTCCTGGTGGGGACACAAAAGCCCAAGGTGTTCTCTATGGGTATACTACACCCTCGACTTGTTCAACGGGCTCCAGCAATGGCAATATTCAGCAGCTTCAAAACTCAACTTTTTCATTTGGCGCTGCAAGACCTTTGCCTAGCCTGTTGCCTATGTCTGATAGACAAGATCCCTATGGTTTTAAATCAGATGATTCACTTGATCAAGTATGTCTTAGGAATCTTGGGTTTGTTGGAAAAGGTACCTGCATTCCAAGTAGGTTTGTAGAAAATGAAATTGAATCATCTGTAACTGATTTTAGTCAAATGAAAGTCAACGTAGATAGCAGTGGCAACACACTGAAGGAGGAGCCAAATTTTATAAATTTTCCCAAAGTGAGCCACCCAATCATAGAAAGATATCCATCTCGTGACCGTTCAAGCGTGTTCACTGAATAG 1935 0.4207 MAASLHTPPHSAADKPSAEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVILSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVARKILNENKEHDHSGSMEDNDRNKRGNDDTEYTSAVDASEIVKAPKKRSNLKEEDVELESDDPTTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAVPGTIESKLGATGRFDIQALAAAGHVPPETLAALHAELLGCPATNIMPTVDQTALLQASMQGPKHSHSEHAVAYGQPLVKCPSNINKNFPPSGLTVNDTSSGYGAWPSSNNTIGSVRPNTSLERVGIQNNNMLMDMLEHQQRQQHQQKQQRQLQQQSLIHDQSCSINVQPSCLVVPSQSSDTFKAVNSPASVNQDCSFGRNAAIDYSLFSQKSNYSLIASQFPGGDTKAQGVLYGYTTPSTCSTGSSNGNIQQLQNSTFSFGAARPLPSLLPMSDRQDPYGFKSDDSLDQVCLRNLGFVGKGTCIPSRFVENEIESSVTDFSQMKVNVDSSGNTLKEEPNFINFPKVSHPIIERYPSRDRSSVFTE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00204 644 SMART REC_2 24 136 IPR001789 GO:0000160
Cca06g00204 644 MobiDBLite consensus disorder prediction 147 170 - -
Cca06g00204 644 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Cca06g00204 644 Coils Coil 414 434 - -
Cca06g00204 644 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 466 IPR045279 GO:0009736
Cca06g00204 644 MobiDBLite consensus disorder prediction 147 205 - -
Cca06g00204 644 SUPERFAMILY CheY-like 23 146 IPR011006 -
Cca06g00204 644 CDD REC_typeB_ARR-like 26 140 - -
Cca06g00204 644 PIRSF RR_ARR_type-B 7 603 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cca06g00204 644 MobiDBLite consensus disorder prediction 180 205 - -
Cca06g00204 644 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Cca06g00204 644 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cca06g00204 644 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 16 466 - -
Cca06g00204 644 Pfam Myb-like DNA-binding domain 209 257 IPR001005 -
Cca06g00204 644 Gene3D - 203 266 - -
Cca06g00204 644 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 263 IPR017930 -
Cca06g00204 644 Pfam Response regulator receiver domain 26 135 IPR001789 GO:0000160
Cca06g00204 644 Gene3D - 24 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00204 Cca-Chr6 4950015 4956399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00204 58 321 Response Regulator Gene Family AT3G16857 52.817 1.07e-90 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca06g00204 Response_reg 1.4e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00204 06 4950015 4956399 Cca06g00204 06 4950015 4956399 ECH