Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00203 ATGGATCAACAAAGTGATTTTGCACTTACCCAGATGAGGAAATCTGTTCAGAACCTTGGTTCTTCTGCAGAGGGCTATGGGGACCCTACACTGATGAGATTTTTGATTTCTCGATCAATGGAGGTGGAAAAGGGTGCAAAGATGTTTGTGCAGTGGCAAAAATGGAGAGCTGACATGGTGCCAAATGGGTTCATTTCAGATTCTGAAATTCGGGATGAATTGGAAACAAGAAAGATCTTATTGCAGGGCTTGTCTAAGGATAAATTTCCTGTGATGATTGTCCAAACATGCAGACATTTCCCTTCCAAGGATCAGATTCAATTCAAGAAATTTGTTGTATATCTTCTGGACAAGACAATTGCAAGTGCTTTCAAAGGAAGGGAAGTAGGAAATGAAAAGTTGATTGGGATTATTGATCTGAAGAATATTTCATATAAAAATGTTGATGCACGGGGGTTAATCACAGGATTTCAATTTTTACAGGATTACTACCCTGAACGTTTAGCAAAGTGCTATATTTTGCACATGCCATGGTTTTTTGTGGCTGTTTGGAAATTAGTTTCTCGCTTCCTAGAGAAAGCTACACTAGAAAAGGTTGTGATTGTAACCAATGAGGATGAGACAAGGGCGTTTATAAGGGAGGTTGGTGAAGAGGTGCTCCCAGAAGAGTATGGTGGAAAAGCTAAGCTTGTAGCTATCCAGGATGTTGAATTGACACCATTGGAAAATGGAACAACAAATTGA 744 0.3952 MDQQSDFALTQMRKSVQNLGSSAEGYGDPTLMRFLISRSMEVEKGAKMFVQWQKWRADMVPNGFISDSEIRDELETRKILLQGLSKDKFPVMIVQTCRHFPSKDQIQFKKFVVYLLDKTIASAFKGREVGNEKLIGIIDLKNISYKNVDARGLITGFQFLQDYYPERLAKCYILHMPWFFVAVWKLVSRFLEKATLEKVVIVTNEDETRAFIREVGEEVLPEEYGGKAKLVAIQDVELTPLENGTTN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00203 247 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 67 232 IPR001251 -
Cca06g00203 247 SMART sec14_4 73 229 IPR001251 -
Cca06g00203 247 Pfam CRAL/TRIO domain 76 226 IPR001251 -
Cca06g00203 247 PANTHER OS03G0850700 PROTEIN 1 239 - -
Cca06g00203 247 SUPERFAMILY CRAL/TRIO N-terminal domain 7 65 IPR036273 -
Cca06g00203 247 Gene3D - 1 239 IPR036865 -
Cca06g00203 247 CDD SEC14 80 227 IPR001251 -
Cca06g00203 247 SUPERFAMILY CRAL/TRIO domain 67 229 IPR036865 -
Cca06g00203 247 PANTHER SEC14 CYTOSOLIC FACTOR-LIKE 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00203 Cca-Chr6 4926148 4937189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00203 24 203 Acyl Lipid Metabolism Gene Families AT5G47730 24.742 1.00e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00203 06 4926148 4937189 Cca06g00203 06 4926148 4937189 ECH