Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00202 ATGGGAAAGACAATCCAAATGCATGGATTTCCATCTAATGTGTTAGCTGAAGAGGTGAAGAAATTTTTGGAGCAACATACAGGCCCCCAAACTGTTCATGCTGTAGAGGTTGGGCAGAATAAAGAAGCAGATACTACAACACATGTTAATGTTCAATTCACAGACAGAAAAAGTGTTGAAACAATCTTGCTCTTAGTTACTCAGCACCTATCTTACAATGAATATGCTCTAAATGCTACAGAAATAAAAGATGTCATTGTGCCAAAGTCAAGGATCTTTCCTCACTGCATGGATGATATAGTAGTGCACTTTGGATGTCAAACATCCAAGGACAAACTAAGTGTACTCTGGGAACATCCAAATGCTTCAGTTAAATTCGGGTCCAGATTGAGAAAAATGTATATATTTTTTCATTACTTGTCAACGGATTATAAGCTGCAGATTTCTTCTGAGAGTATATCACGTATTGAGCTGCATCGTTCTGATGATTTAACCAAAAAGCTTCTCATTTTTCAGTTACGTGGTGCTCCTCTGATCTACGAGAAAGATGTTTCCAAAAGCAAATATTTTAAGGAGGCTCATGACAACCATTGGTTTAGAGGAGTAGATTTCACCCCATCATGTAGCATTGGACAATCTTCTGCTTTATGTTTTGAGCTTCCTCAAAGTGTTGAGGTCCCAAAATTCCATCAGCACTTTCGTAATTATAAGGAAGTTAATGATGGCATCTTTACTCTTGAGAGACACCTTGGTTTCTGTTCTAACTTGAATTTTGTCCCCATAGTGATCCCTCCAAATGACTTCAACTTGCCATACAAAATTGTGTTCAAAATCAACTCATTGATTCAGCATGGATGCCTTCCTGTGCTTGCAATTGACATCAATCTTTTTCATCTGGTTGATCCTAGAAGAGTACAGCTTGAATACATAGAAAGTGCCCTGCATAAATTAGATCAAATGAAAGAATGCTGCTATGAACCTGCACAATGGTTGGAGAAACAATACAAGAAATACTCAACAAATAGTCAACTTCCAGTATCTAGTGCTATTTCTTTAGATGATGGGTTGGTCTATGTGCATAGAATACAAGTGACACCATCCAAAATATATTTCTGTGGTCCTGAAGTGAACCTTTCCAATCGTGTCTTGCGCAACTATCCTGAAGACACTGATAACTTCCTTCGTGTTTCTTTTGTTGATGAGGACATGGATAGACTTCATTCAGCAGATTTGGTGCCACGTTCATGTTCTATAGATGTGGACAGAGAAACAAAGATTCATGAGAGGGTACTGTCAACACTGAAAAATGGCATATCAATTGGTGATAAAAAGTTTGAGTTTCTTGCCTTCTCACCAAGTCAATTACGGGATAACTCTGTGTGGATGTTTGCATCAAGAACTGGACTTACAGCATCTGATATAAGAAAGTGGATGGGAGAGTTTCATGAAATTAGAAATGTGGCAAAATATGCAGCTAGGCTTGGTCAATCATTCAGTTCTTCCAGGGAAACAGTGAGTGTTGGAAAACATGAAATTGAAATTATTCCTGATATAGAACTAAGAAGAGGTGAAATCAAGTTTTGTTTCTCTGATGGAATTGGGAAGATATCTTCTGAATTGGCTCAAAAAGTGGCTAAGAAATGTGGTTGTAAGGATAACATTCCATCTGCATTTCAAATCAGATATGGGGGGTACAAAGGTGTTGTTGCTATTGATCCAACTTCTTCAACTAAATTGTCCTTAAGAAAGAGCATGTGCAAGTACAAGTCAGAAAACACAAAATTAGATGTTTTGGCATGGAGTAAATACAGACCTTGTTACCTTAATCGTCAAATAATTACCCTCTTGTCCACACTTGGGGTCAACGATCAAGTCTTCAGAAAGAAACAACGAGAGATCCTTAATCAGCTTAAAATGATATCCAGAAAGCCGTTGAAGGTGCTGGACTTGATGTCCACAGGAGAGATTAGAAACATTTTAAGGGAAATGCTTATCTGTGGCTTTCGTCCAACTAAGGAACCATTTCTTTCCATGATGTTGCAAACGTTATATGCATCAAAACTACAGGAATTGCAGCTCAAAACAAGGATACTTGTTAAGAAAGGAAGAGCAATGCTAGGATGCTTAGATGAAACTAGGACATTAAAATATGGAGAGGTTTTTGTGCAGATATCTCACCAAAGAAATAAGCAATTTCATGCTATGTCCTCTCTTTCTTCTAACAGATATGGATCAAACAAAAGCAAACATATTGTTAAGGGAAAGGTAGTTGTAGCCAAAAATCCTTGTCTGCACCCAGGAGATGTGCGAGTTTTAAGAGCAGTGGATGTACCTTCCCTGCATCATATGGTGGACTGTGTTGTTTTTCCACAGAAGGGGAGAAGACCTCATCCTAATGAATGTTCAGGAAGTGACTTGGATGGAGATATTTACTTTGTCAGTTGGGACCCTGATCTTATTCCTCCTCGTCAGGAAAATCCCATGGATCATGCACCATCTAAAGTTGTGATTGTGGATCATGATGTTACATTACAGGAAGTTGAGGAGTATTTTGCTCACTACATAGTTAAAGACAGGTTAGGAATTGTTGCAAGTGCACACACTGTCTTTGCTGACAAAGATCCTGAGAGGGCAATGAGCCCTGCATGTATTGAGCTTGCAAAGCTACACTCAATTGCAGTTGATTTTGCAAAATCTGGTGTGCCAGCAGAAATACCGCAGCATCTACGCGTGGAAGAGTATCCAGATTTCATGGAAAAGCCAGACAAACCAAGTTACCAATCAAACAGCATAATAGGAAAGCTCTATCGCGAGGTGAAGAATGTTGCACAACACAGGAGTCTCTCTAAGCCCTTCACTAGAAAAGTGGCAAGGCAATCATATGACCATGACATGGAGATTGATGGCTTTGAGAAGTATGCAGCTATTGCTAGTGAATACAAGAACATGTATGATTTCAAGTTGGGGAACCTTATGGATTACTATGGCATAGAGACAGAAGCAGAAATAGTCAGTGGCAATATCTTGAAAATGTCAAAAGCCTTCAATGATAGAAAGGATTTGGAAGGAATTAACCATGCTATGATATCACTTAGAAAGGAAGCTAGAAGCTGGTTCAATGTGATGATAGAAAAGTCAAATTCTCAAGGGGATGATGCCAATGCAATAGCATCAGCTTGGTACCATGTTACATATCATCCTAGTTACTGGGGATGCTATAATCAAGGGTTAAACAGGGAACATTTCATCAGTTTCCCATGGTGTGTATATGACACTCTCATCCAGATAAAGAAGGACAAAGTCACTCGAAGAACTTTTACCATGAAGATTTGGACAATACTGAAACTGTTACCCATATCACTGTTTTGCTTCTTATTGTGGCTAATAGTACAATATCTAACCGGTTGA 3408 0.3873 MGKTIQMHGFPSNVLAEEVKKFLEQHTGPQTVHAVEVGQNKEADTTTHVNVQFTDRKSVETILLLVTQHLSYNEYALNATEIKDVIVPKSRIFPHCMDDIVVHFGCQTSKDKLSVLWEHPNASVKFGSRLRKMYIFFHYLSTDYKLQISSESISRIELHRSDDLTKKLLIFQLRGAPLIYEKDVSKSKYFKEAHDNHWFRGVDFTPSCSIGQSSALCFELPQSVEVPKFHQHFRNYKEVNDGIFTLERHLGFCSNLNFVPIVIPPNDFNLPYKIVFKINSLIQHGCLPVLAIDINLFHLVDPRRVQLEYIESALHKLDQMKECCYEPAQWLEKQYKKYSTNSQLPVSSAISLDDGLVYVHRIQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVDEDMDRLHSADLVPRSCSIDVDRETKIHERVLSTLKNGISIGDKKFEFLAFSPSQLRDNSVWMFASRTGLTASDIRKWMGEFHEIRNVAKYAARLGQSFSSSRETVSVGKHEIEIIPDIELRRGEIKFCFSDGIGKISSELAQKVAKKCGCKDNIPSAFQIRYGGYKGVVAIDPTSSTKLSLRKSMCKYKSENTKLDVLAWSKYRPCYLNRQIITLLSTLGVNDQVFRKKQREILNQLKMISRKPLKVLDLMSTGEIRNILREMLICGFRPTKEPFLSMMLQTLYASKLQELQLKTRILVKKGRAMLGCLDETRTLKYGEVFVQISHQRNKQFHAMSSLSSNRYGSNKSKHIVKGKVVVAKNPCLHPGDVRVLRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPPRQENPMDHAPSKVVIVDHDVTLQEVEEYFAHYIVKDRLGIVASAHTVFADKDPERAMSPACIELAKLHSIAVDFAKSGVPAEIPQHLRVEEYPDFMEKPDKPSYQSNSIIGKLYREVKNVAQHRSLSKPFTRKVARQSYDHDMEIDGFEKYAAIASEYKNMYDFKLGNLMDYYGIETEAEIVSGNILKMSKAFNDRKDLEGINHAMISLRKEARSWFNVMIEKSNSQGDDANAIASAWYHVTYHPSYWGCYNQGLNREHFISFPWCVYDTLIQIKKDKVTRRTFTMKIWTILKLLPISLFCFLLWLIVQYLTG 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00202 1135 Pfam RNA dependent RNA polymerase 364 939 IPR007855 GO:0003968
Cca06g00202 1135 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1130 - -
Cca06g00202 1135 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1130 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00202 Cca-Chr6 4916001 4922247 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00202 06 4916001 4922247 Cca06g00202 06 4916001 4922247 ECH