Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00200 ATGGGTAAAACAATTGAGTTGTATGGATTCCCTACTTCTGTGACTGTCGCCGATGTAAAGAAGTTTGTAGAGAACATTACTGGTGAAGGAACTGTGTTCGCCATTAAGTTAAGGCATGGCAAAGGTCGGTTTCCAAGAGCATTTGCTATTATTCAATTCACCGTCGCAAATCATGCTGCATATATGATGTCTAAAGCTAACAACAGTTTGAGAACATTGCGGTATGGGACCTCCTTTTTAAAAGCTCGGGAAATGGAAAGAGATATTGTGCCAAAACCAAGAAATTTTTTGCATAGTTTGGAGGATGTGAAACTGTATTTTGGCTGTCAGATCTCAAAAGGAAGATTCTATGTTTTGTGGGAAATGCTGGATGTCAGTATAAATTTTGGGTCTGGAATGAGAAAGGTGCATTTCTTATTTTCCCATAACAATGTGCAATACAAACTTGAGCTTTCATATGAGAACATTTGGAAGATTGAGCTGCATCGACCATGGGCTGAAGCTGCACGTTATCTCCTGATTCAGTTACTTGGTGCTCCCCGGGTTTTTGTGAATGATGTTCCTACGTCAGAAAATTTATTTGAAAATATGTTTGACAGTCCTTTGTTCAACTTCTACAAAGATGGCCTTGATGAGCAATGGATCCGAGCAATAGATTTCACTACATATAGTTGTATTGGGCAGTCCACTGCCATATGTCTGGAGCTTCCTTGTGGCCAACAACTTCCAAATTTCAAGGAAAACTTTGGTTATTATGAGGAAAGTAATAGGCAATACACTTTACAGACAGGAGTTCCATTTTCTCAAAATGTGGGTCTTGTCCCCATTGTTGCTCCTCCTCAAGGTTTTGACATACCTTATGACATTTTGTTTAAAGTCAATTCATTGGTTCAGCATGGGTGTCTTGCAGGACCTGCACTTGATGGTCACTTCTATCACTTGGTGCGTAAAATGCCACTTGCATTCATTGAACATGCTTTAGAAAAAATCTACTATTCAAAGGAGTTCTGTTATGAACCCACAGAGTGGTTGCATACTGAGTACACAAGGTACCTTAGATTAAAGAATCCTCGTCAGTCACCTGCGATATCTTTGGATACGGGGTTGGTATATGTTCGCAGGGTTCAGGTCACACCTTGCAAAGTTTACTTCTGTGGTCCAGAGATTAATGTCTCAAATCGTGTTATCCGTAATTTCCATGAACATATTGATAACTTTCTACGTGTTTCATTTGTTGATGAGGAGTTGGATAAACTGTTTGCAACTGATTTATTGTCACGTACACAGAACAAGAAAACTGAGATATATACCAGAATTCTTTCCGTACTTACGAATGGCATAGTTATTGGTGACAAGAAATTTGAGTTTCTAGCATTCTCGTCAAGTCAGTTGCGGGAGAACTCTCTCTGGATGTTTGCTCCTACAACAACTGGATGCACTGCTGCTTATATAAGGGAATGGATGGGAGATTTTCGCAAGATTAGGAATGTGGCTAAATATGCTGCTAGGCTGGGACAATCTTTTGGTTCGTCTACTGAAACTCTAAGTGTCCATAGGCATGAAATTGAAATTATTCCTGATGTAAAGAAGCGTACATATGATGGGGTTGATTATGTCTTCTCTGATGGAATCGGGAAAATATCTCTTGCATTTGCCAAGAAAGTAGCTAAAAAATGCGGTTATGATTCCACTCCATCTGCCTTTCAGATTCGATATGGAGGGTACAAAGGAGTGGTGGCTGTTGACCCAACATCACATTATAAGTTATCACTGAGGAAGAGCATGCAGAAGTATGATTCAGATATCACGAAGTTGGATGTTTTGGCCCGAAGTAAGTTTCAGCCTTGTTATCTGAATCGGCAGTTAATTACCCTCTTGTCCACTCTTGGTATCAGGGATGGTGTTTTTGAGAAAAAACAAAGAGAAGCTGTTGATCAACTGAACACTATACTGACAGATTCGTTAAAGGCACAGGAAGTTCTGGATTTGATGTCTGTGGGAGAGATAACTAATGTTCTGAAGGAGATGCTCATTTGTGGCTACAAGCCTAATCTTGAACCTTTCCTATCAATGATGCTGCAAACCTTTAGGGCATCGAAACTGTTGGAATTGCGACTCAAGTCCAGGATCTTTATTCCAAAAGGAAGAGCAATGATGGGATGTCTAGATGAAACTGGAACCCTGGAATATGGTCAAGTATTTGTTCAGTTTTCTAAAAATAGGCTGCAGAATCCATCTGACGATTCACATCATTTGGCCCAGAATTATATGGTTGCAGCTAAGGTAGTAGTAGCAAAAAACCCCTGCTTGCACCCAGGTGATGTGCGTATTTTAAAGGCTGTGGATGTGCCAGCTTTGTACCACATGGTGGATTGTGTAGTTTTCCCTCAAAAAGGACCCAGACCTCATCCAAATGAGTGTTCGGGAAGTGATCTGGATGGGGATATCTACTTCGTTTGTTGGGACCAGGAATTGATTCCTTCTTGCCCAGTTAAACCAATGGACTACACTGCTGCCGCAACTATTGAAATGGATCATGATGTGTTGATTGAGGAGGTTGAGGAGTATTTTACCAACTACATAGTCAATGACAGTCTGGGAATAATTGCCAATGCACACACTGTCTTTGCAGATAAAGAACCTATGAAAGCAATGTCTGAGCCATGTATTAAGCTTGCAAAGCTGTTTTCAACAGCTGTTGACTTTCCAAAAACTGGTGTTCCAGCTGTTATACCTCCTGAACTTTATGTCAAAAATTATCCAGATTTCATGGAGAAGCCTGACAAACCCACCTACGAGTCGCATAACGTGATAGGAAAGCTCTTTAGGGAAGTGCTAGAAGTTTCAACAAGTGCTGGCTCTATTTCATCCTTCACTCAAGACGTCGCGAGACGGTCTTACGACCCTGACATGGAAGTTGATGGCTTTATGGAGTATGTTGATGATGCTTTCTATCACAAAACCAATTATGACTACAAATTGGGAAATTTGATGGACTACTATGGGATCAAAACTGAAGCTGAAATCCTCAGTGGGAATATCATGAAAATGTCGAAATCTTTCAACAAAAGGAGGGATTCTGAAGCAATCAATATGGCTGTGAGGTCCCTAAGGAAAGAGGCCAGGACCTGGTTCAATGAGAGCAGCAGTGGTGTAGATTCTGGGAGTGATGATGCATATGCAAAAGCCTCTGCTTGGTACTATGTTACTTATCATCCAAGTTACTGGGGTTGCTACAATGAAGGGATGAATAGGGATCATTATCTCAGTTTCCCATGGTGTGTTTACCCTCAGCTTATGCAAATTAAGAAGGAGAAAGCCAGCATGAGAAGGTACTCTTCTTTGAGACGCAGGTTCAGTCATGGGTTGGATTTGAATTGA 3381 0.4085 MGKTIELYGFPTSVTVADVKKFVENITGEGTVFAIKLRHGKGRFPRAFAIIQFTVANHAAYMMSKANNSLRTLRYGTSFLKAREMERDIVPKPRNFLHSLEDVKLYFGCQISKGRFYVLWEMLDVSINFGSGMRKVHFLFSHNNVQYKLELSYENIWKIELHRPWAEAARYLLIQLLGAPRVFVNDVPTSENLFENMFDSPLFNFYKDGLDEQWIRAIDFTTYSCIGQSTAICLELPCGQQLPNFKENFGYYEESNRQYTLQTGVPFSQNVGLVPIVAPPQGFDIPYDILFKVNSLVQHGCLAGPALDGHFYHLVRKMPLAFIEHALEKIYYSKEFCYEPTEWLHTEYTRYLRLKNPRQSPAISLDTGLVYVRRVQVTPCKVYFCGPEINVSNRVIRNFHEHIDNFLRVSFVDEELDKLFATDLLSRTQNKKTEIYTRILSVLTNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIREWMGDFRKIRNVAKYAARLGQSFGSSTETLSVHRHEIEIIPDVKKRTYDGVDYVFSDGIGKISLAFAKKVAKKCGYDSTPSAFQIRYGGYKGVVAVDPTSHYKLSLRKSMQKYDSDITKLDVLARSKFQPCYLNRQLITLLSTLGIRDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSVGEITNVLKEMLICGYKPNLEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETGTLEYGQVFVQFSKNRLQNPSDDSHHLAQNYMVAAKVVVAKNPCLHPGDVRILKAVDVPALYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDQELIPSCPVKPMDYTAAATIEMDHDVLIEEVEEYFTNYIVNDSLGIIANAHTVFADKEPMKAMSEPCIKLAKLFSTAVDFPKTGVPAVIPPELYVKNYPDFMEKPDKPTYESHNVIGKLFREVLEVSTSAGSISSFTQDVARRSYDPDMEVDGFMEYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIMKMSKSFNKRRDSEAINMAVRSLRKEARTWFNESSSGVDSGSDDAYAKASAWYYVTYHPSYWGCYNEGMNRDHYLSFPWCVYPQLMQIKKEKASMRRYSSLRRRFSHGLDLN 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00200 1126 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1118 - -
Cca06g00200 1126 CDD RRM_SF 5 68 - -
Cca06g00200 1126 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1118 IPR007855 GO:0003968
Cca06g00200 1126 Pfam RNA dependent RNA polymerase 377 945 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00200 Cca-Chr6 4888006 4898902 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00200 06 4888006 4898902 Cca06g00200 06 4888006 4898902 ECH