Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00197 ATGGTGTCGAAATCCTATTCAAACCTATTGGAGTTGGCCTCTGGAGAGGCTCCATCATTTGGGTACATGAACAGGGGAATTCCAAGGATTATGACTGTGGCTGGGTTGATATCTGATGTTGATGATGACCCAGTTGAGAGTGTGTGTTCTGATCCATCTTCGTCGTCGGTGCACCGAGACCGGATAATCATGGTGGCTAATCAGCTTCCTTTAAGGGCTCAGAGAAGGCTAGATGGGAGTAAGAGTTGTTGGTCTTTTGAGTGGGATGAGAATTCACTTCTTCAGCTGAAAGATGGGTTGGGAGATGAAGATATTGAGGTTATTTATGTGGGGTGTCTCAAGGAGGAGGTGCATCCAAGTGAACAGGATGAGGTTTCACAGATACTTCTTGAGACCTACAAGTGTGTCCCAACTTTTCTCCCACCAGACCAGTTTACTAGGTACTATCATGGTTTTTGCAAGCAGCAGTTGTGGCCACTGTTTCATTACATGTTGCCCTTGTCACCAGAGCTTGGTGGGAGGTTCAATAGGTCACTGTGGCAGGCTTATGTCTCAGTCAATAAAATTTTTGCAGATAGAATAATGGAAGTAATCAACCCTGAAGATGATTATGTGTGGATACATGATTATCATCTGATGGTGTTGCCAACTTTCCTGAGGAAGAGATTCAACAGGGTGAAACTGGGGTTCTTCCTTCATAGCCCATTCCCTTCATCAGAAATATATAAGACATTGCCCGTTAGGGAGGAGATCCTGAGGGCCCTCCTCAATTCGGATTTGATTGGCTTCCATACGTTTGATTATGCGCGGCATTTCCTCTCCTGCTGTAGCCGGATGCTTGGCCTCACGTACGAATCGAAGCGAGGTTATATTGGAATTGAGTACTATGGTAGGACTGTTAGTATCAAAATTCTCCCTGTTGGCATCCACATGGGTCAGCTTCAATCGGTTTTGAGGCTGCCACAGACGGAAGAAAAAGTTTGTGAGCTCATTAGACGGTTTTCTGATCAAGGAAGGACAATGTTGCTTGGTGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTGTTGGCCATGGAGCAGCTTCTCATTCAGCACCCTGAGTATCAGGGAAGGGTAGTGCTGGTTCAGATAGCGAATCCTGCAAGGGGGCGAGGGAAGGATGTGAAGGAAATCCAAGCTGAGACGAAGGCCACGGTGAAACGGATTAATGAAACATTTGGGAAACCCGGGTATAATCCTGTTATTCTGATTGAGGAGCCTCTCAAGTTTTATGAGAGAGTTGCTTATTATGTTGTTGCTGAGTGTTGTTTAGTCACTGCAGTAAGGGATGGAATGAATCTCATACCGTATGAGTATATCATCAGTCGTCAAGGAAATGAGACATTGGATAAAGTTTTGGGTTTGGCAACCTCCCCGAAGAAGAAAAGCATGTTGGTTGTGTCTGAATTCATTGGCTGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCGTGGAATATTGATGCAGTAGCAGATGCAATGGACTCTGCACTGGAAATGGCTGATTCAGAGAAGGAGCTTAGGCATGAAAAGCATTATAGATATGTGAGTACTCATGATGTAGGGTACTGGGCACGAAGCTTCTTGCAAGATTTGGAAAGGACTTGTAGCGATCATGTGCGGCGAAGATGGTGGGGGATTGGGTTTGGATTGAGCTTTAGAGTGGTTGCACTTGATCCCAACTTCAAGAAGCTCTCAATGGAGCACATAGTTTCAGCTTACAAGAGGACAAAAACTAGGGCAATCCTTCTAGACTATGATGGTACACTAATGCCTCAAGCGTCCATTGATAAGAGTCCAAGCAGTAAATCCCTTGAAATTCTTAGTAGTTTGTGTAGAGATAAGAACAACATGGTTTTCCTTGTTAGTGCTAGAAGCCGGAAGATGCTTTATGATTGGTTTTCACCTTGTGAGAATCTGGGAATTGCTGCTGAGCATGGTTACTTTTTGAGAATGAAGCGAGATGAAGAGTGGGAAACACATGTTGCCGCAACGGACTGTAGTTGGAAACAAATTGCAGAACCTGTAATGAAACTTTATACTGAAACAACTGATGGGTCCACCATTGAAGACAAGGAGACTGCACTTGTTTGGTGCTATGAGGATGCAGATCCAGACTTTGGATCATGCCAAGCTAAGGAACTTCTAGATCATCTTGAGAGTGTGCTTGCAAATGAACCAGTAACAGTCAAGAGTGGCCAAAGTAATGTAGAAGTTAAACCACAGGGTGTGAGCAAGGGACTAGTGGCAAAACGCCTACTTTCTGCTATGCAAGAAAAGGGTATGTGCCCTGATTTTGTTTTATGCATAGGAGATGACAGGTCCGACGAAGACATGTTTGAGGTAATCACCAGTTCAATGGGCGGTCCGATCTCACCTCGGGCCGAAGTATTCGCCTGCACCGTTTGTCGAAAACCTAGTAAGGCCAAGTACTATCTGGATGATACAGCTGAAATAGTGAGATTGCTTCAGGGCTTAGCCTGTGTTTCAGAACAAGTAGTTTCATTTCAGAACAAATAG 2571 0.445 MVSKSYSNLLELASGEAPSFGYMNRGIPRIMTVAGLISDVDDDPVESVCSDPSSSSVHRDRIIMVANQLPLRAQRRLDGSKSCWSFEWDENSLLQLKDGLGDEDIEVIYVGCLKEEVHPSEQDEVSQILLETYKCVPTFLPPDQFTRYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREEILRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHMGQLQSVLRLPQTEEKVCELIRRFSDQGRTMLLGVDDMDIFKGISLKLLAMEQLLIQHPEYQGRVVLVQIANPARGRGKDVKEIQAETKATVKRINETFGKPGYNPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNETLDKVLGLATSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKELRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFKKLSMEHIVSAYKRTKTRAILLDYDGTLMPQASIDKSPSSKSLEILSSLCRDKNNMVFLVSARSRKMLYDWFSPCENLGIAAEHGYFLRMKRDEEWETHVAATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSNVEVKPQGVSKGLVAKRLLSAMQEKGMCPDFVLCIGDDRSDEDMFEVITSSMGGPISPRAEVFACTVCRKPSKAKYYLDDTAEIVRLLQGLACVSEQVVSFQNK 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00197 856 Pfam Trehalose-phosphatase 600 833 IPR003337 GO:0003824|GO:0005992
Cca06g00197 856 TIGRFAM T6PP: trehalose-phosphatase 595 843 IPR003337 GO:0003824|GO:0005992
Cca06g00197 856 Gene3D - 596 724 IPR023214 -
Cca06g00197 856 Gene3D - 725 855 IPR023214 -
Cca06g00197 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
Cca06g00197 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 553 - -
Cca06g00197 856 Gene3D Glycogen Phosphorylase B; 53 315 - -
Cca06g00197 856 CDD HAD_TPP 598 838 - -
Cca06g00197 856 SUPERFAMILY HAD-like 597 844 IPR036412 -
Cca06g00197 856 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 599 800 IPR006379 -
Cca06g00197 856 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 850 - -
Cca06g00197 856 CDD GT20_TPS 61 550 IPR001830 GO:0003824|GO:0005992
Cca06g00197 856 Gene3D Glycogen Phosphorylase B; 316 534 - -
Cca06g00197 856 Pfam Glycosyltransferase family 20 61 550 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00197 Cca-Chr6 4804479 4809274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00197 1 851 Trehalose Biosynthesis Gene Families AT1G68020 80.925 0.0 1457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00197 06 4804479 4809274 Cca06g00197 06 4804479 4809274 ECH