Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00196 ATGGAAGCTACACAAATTAGAGAAGAAAATGGAGGGAGAAAGGGGGTTCAGGGAGGTGATGCACAGAAAGAAAATGAAGACATTCTAAAGAAGATCATTGCAAGTCATCCTTTGTATGAAGTTCTGATTGAATCTCACATCAACTGCTTGAAGGTGGGATTGAACGGAGGTGGAGAGGTTGATGCAACAACTGCTGCATGGAAGAAGTTGGTCGACTCCAAGTCCAAAGCAACTTCTAGTCCTAACACTTCAGAGTTAGATCACTTCATGGAAGCGTATTGCATGGCACTGAGGAAGCTGAAGGAAGCGATAGAAGAACCAACAAAAGAAACAAATGCTTTCATCAGAGCTACGTATCTTCAACTAAAGGAACTCAATCACCCATAA 387 0.4212 MEATQIREENGGRKGVQGGDAQKENEDILKKIIASHPLYEVLIESHINCLKVGLNGGGEVDATTAAWKKLVDSKSKATSSPNTSELDHFMEAYCMALRKLKEAIEEPTKETNAFIRATYLQLKELNHP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00196 128 SMART KNOX1_2 27 69 IPR005540 GO:0003677|GO:0005634
Cca06g00196 128 Pfam KNOX2 domain 84 125 IPR005541 GO:0003677|GO:0005634
Cca06g00196 128 SMART KNOX2_2 76 127 IPR005541 GO:0003677|GO:0005634
Cca06g00196 128 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g00196 128 Pfam KNOX1 domain 29 53 IPR005540 GO:0003677|GO:0005634
Cca06g00196 128 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 123 - -
Cca06g00196 128 PANTHER FUSED COMPOUND LEAF 1 11 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00196 Cca-Chr6 4721931 4723834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00196 27 125 Homeobox Transcription Factor Family AT4G08150 35.922 1.47e-11 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00196 06 4721931 4723834 Cca06g00196 06 4721931 4723834 ECH