Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00195 ATGACAAACCGATCGCGAAAATCCAAGCGCAAGCTCCACGCGGAGGAGCCGCCTCCGCTCGCCGTCACCAAGAAGCTCCGGCAGAAGCTGCCTCGCCGCCCTCGGGAAAACATCTCGCCGGTGCTTCTTGTCAGAATCTCCGGCGAAAATCCTCGTTTCTCCGTCAACTCGAGCTCCGGCTCCGACTTCGCCGCCGGCGAAGCTTCCTGCAACTCCAGCAGAGCCTCCGTCGCCGGCGAGGGAAACGCGAACTCGAGAAACGAACCGTCAATCGATTCCTCGATAAACCGGAGGTTCGAGAAGCGAAACGCAAACGAAGTGGAGGTGTCAGGGTCTTCGTGCGTGGACTCCAATTCGTTCGCTCGCGAGCGGTGCAGAAGCCTGATTCTGAAGTTCAAAAGAGAGAGTAAGGATCCGGAAGAAAACGACGACGTTTCGGAAGCTCTCGCGGAATCAGAGATTACTATTCTGAAGTTCAAAAGCGGAAGAGAAACTAAGCATCTTAAAGAAAACGACGATGTTTCTTGCACGAAATCAGAGATTACTAGCGAGGAACGGTTCAATTCAAAAGCCGGTAACGGTAACGGTAATGGAAACATTAAAATGTCTTTCGAGTCAAACGGAAACGACGTCGTGTCGTTTAGTTCCGGCGTTCGCGCCTCGTTTGAGGAGGAAACGAATAGAAACCAGGAAAACAGAGCATCGGAATGTGAATACTGTGAAGAGAATTGCGCGGATTTAATAGCGCAATCGATGGCGAAGCACGAGTCGGACAATTACGACGTCGTTGCGGATCTCACTTGCTCTGAGGATCTGCGCTTCTCGTACAGTGACGATGAATTGGATTACTGTTCGAGCCAGGGAACTGAGTTCTCTGAATTTCACTCCGAGATTTTCGGCGAATGCTCGCAGCAAGAGCCTTCGGATTACTCTCTGTCGCTGTTCGTCGATTCTGGAAGCCAGTTTTCGCAGGGATCCGTTGGAGAAACTCCTTCGCCGACGTACTCGCTGTTCCTTCAGTACCGCAAGGAGTTCTCCGCGCTAGCTTCTCCTCTAATGCACGCTTCACGCGTTGCCGAAGATGAGGTTTCTGCTGGAGTCAAATTTACGACATTCGAAGATTCTGATGACGAAGATAGCTACCGGATGCTGAGGAAGAGGGAAAGGAGGCAGGGTTTTCTGTCGAATTATGGTGAAATATATTTCTCTACCACCGAATTCGGAGAGACCGTGCTTGAGCAACGTGTGCAAATGGTCCACTGGATCGTTGAGCAATGTTATAGAAAACAGCTTCGGCAAGAGACAATGTTTCTTGGAGTCAACCTATTTGATCGCTTCCTAAGCAAAGGATATTTCAAAGCCAAAAGAAACCTTCAAATTGTTGGAATAGCTTGCCTTACGTTAGCGATCAGGATCGAAGAAAACCAGCAACATAACAGAGTGGGGCAAAAAGATTTCTTCATAGGAAGCAGTGTGTACAGTAGATGCGAGGTGGTAGCTATGGAATGGATGGTGCAGGAGGTGCTCAAGTTTCAGTGCTTTCTCCCCACCATCTACAGTTTCTTGTGGTTTTACCTAAAAGCAGCTAATGCTGATGCAGTCGTTGAGAAGAGGGTCAAGTATCTGGCAGTACTCGCACTGTCAGGTCTTGAGCAGATATGCTACTGGCCGTCAACAGTTGCTGCAGCAATTGTAATCCTGGCTTGTCTTGAAATCAATCAAAATGCCCTCAAAGTCATAGGGATCCACGTTAGATCAAAAGATGAGAATCTGTATGAATGCATAGAGAACCTGGAGTGGTTGTTACGCTGTCTAGGATAA 1821 0.4893 MTNRSRKSKRKLHAEEPPPLAVTKKLRQKLPRRPRENISPVLLVRISGENPRFSVNSSSGSDFAAGEASCNSSRASVAGEGNANSRNEPSIDSSINRRFEKRNANEVEVSGSSCVDSNSFARERCRSLILKFKRESKDPEENDDVSEALAESEITILKFKSGRETKHLKENDDVSCTKSEITSEERFNSKAGNGNGNGNIKMSFESNGNDVVSFSSGVRASFEEETNRNQENRASECEYCEENCADLIAQSMAKHESDNYDVVADLTCSEDLRFSYSDDELDYCSSQGTEFSEFHSEIFGECSQQEPSDYSLSLFVDSGSQFSQGSVGETPSPTYSLFLQYRKEFSALASPLMHASRVAEDEVSAGVKFTTFEDSDDEDSYRMLRKRERRQGFLSNYGEIYFSTTEFGETVLEQRVQMVHWIVEQCYRKQLRQETMFLGVNLFDRFLSKGYFKAKRNLQIVGIACLTLAIRIEENQQHNRVGQKDFFIGSSVYSRCEVVAMEWMVQEVLKFQCFLPTIYSFLWFYLKAANADAVVEKRVKYLAVLALSGLEQICYWPSTVAAAIVILACLEINQNALKVIGIHVRSKDENLYECIENLEWLLRCLG 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00195 606 MobiDBLite consensus disorder prediction 1 40 - -
Cca06g00195 606 MobiDBLite consensus disorder prediction 74 96 - -
Cca06g00195 606 CDD CYCLIN 515 588 IPR013763 -
Cca06g00195 606 PIRSF Cyclin_A_B_D_E 53 270 IPR039361 -
Cca06g00195 606 PIRSF Cyclin_A_B_D_E 378 604 IPR039361 -
Cca06g00195 606 Pfam Cyclin, N-terminal domain 410 512 IPR006671 -
Cca06g00195 606 Pfam Cyclin, C-terminal domain 516 599 IPR004367 -
Cca06g00195 606 MobiDBLite consensus disorder prediction 74 92 - -
Cca06g00195 606 Gene3D - 408 507 - -
Cca06g00195 606 SMART cyclin_7 420 507 IPR013763 -
Cca06g00195 606 SUPERFAMILY Cyclin-like 375 512 IPR036915 -
Cca06g00195 606 SUPERFAMILY Cyclin-like 516 598 IPR036915 -
Cca06g00195 606 Gene3D - 508 604 - -
Cca06g00195 606 ProSitePatterns Cyclins signature. 415 446 IPR006671 -
Cca06g00195 606 PANTHER CYCLINS 4 596 IPR039361 -
Cca06g00195 606 CDD CYCLIN 415 505 IPR013763 -
Cca06g00195 606 PANTHER CYCLIN-SDS 4 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00195 Cca-Chr6 4706495 4711796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00195 379 575 Core Cell Cycle Gene Families AT5G11300 32.512 2.04e-20 92.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00195 06 4706495 4711796 Cca06g00195 06 4706495 4711796 ECH