Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00192 ATGGCTCTCTGCACCCCTTCCTTCATCTTCCTCAGCTTCTTCTTGTTCCTCTTCAATCTTCAACCCTCACTCTCCCAACAACAACAACAACTCACATCCTTCAACATCTCACACTCCCCATGGCACCCATCACAAAACAGAACCCTTCTCTCTCCCAACAAAAACTTCACTGCAGGGTTCTTCCCTCTTCCCAACTCCCCCAACCTCTTCACCTTCTCCATTTGGTACTCCAAAGTCCCTATAACTGCAAACCCCCTTGTGTGGAGCTCCAAAACCCAAGTCAACACTTCTGGGTCCCTTGTAATAACCCCAAAAGGTGAACTTTTTCTCGATGGTTCACCTTTTCAAGATGCTTCCAATGCTTCCTCCACCTCCAATTCCACCCAACTTGTTCTCCAAAACGACGGCAACTTGGTCTTTGGGAACTGGACCAGCTTCAAGAACCCCACCAACACGGTTTTGCCCAACCAGAACTTCAGCACTGGGATTGAGCTTCACTCCAGCAATGGGAAATACAGGTTCATCAAGTCTCAGTTTTTGGTTCTCAATTCCACCAATGATCAATACTACAGCACCCCAAGCCCCTTGCTGAGCATGGATGATGCAGGGAAAATGACCATGGCGGTTAACTCTTTCCTCACTTCAGACTATGGTGACCCCAGGTTCAGGAAACTGGTCCTAGGTGATGATGGGAATCTCAGGATCTACAGCTTCTACCCTGAGCCGCAGAATCAGTGGGTTGAGGTTTGGAAAGGGATATGGGAGATGTGCAAAATCATAGGTAGATGTGGGCCTAATGCCATTTGTGTGCCAACTGAGGATTTGAACATTTCCACTTACTGTGTTTGCCCATCTGGGTTTAGCCCAAACCCAGGTGGGCCTGAAGAGGGTTGCAAAAGGAAAGCCCCTCTTTCCCAACACACCCATTTTGTGAGACTAGATTATGTGAACTACACCAGTGATGGCAGCGTGAACCAAATCAATGCTGAGAACTTCACAATCTGTGAGTCCAGATGCTCAACAGACAAAACCTGCCTTGGATTTGGCTTCAAATATGATGGATCTGGCTTCTGTGTATTGCTCAAAGGGACAGAGCTTAGATATGGGTACTGGTCACCAGGCACCGAGGCTGCCTTGTTTTTGAAGGTTGACCAATCTGAGTCAGCATCCTCCAACTTCATTGGCATGACTGAGGTGATGCAAACCACATGCCCTGTGAACATAAGCCTTCCACTCCCTCCAAAGGACTCAAACACCACTGCGAGGAACATTGCCATAATCTGCACCCTTTTTGCTGCAGAACTCATAGTTGGGGTTGCCTTCTTCTGGTCCTTCCTCAAGAGGTACATCAAGTATAGGGACATGGCCACCACACTGGGCCTTGAGCTTCTTCTCCCTGCTGGGGGCCCAAAGAGGTTCACCTACTCAGAAATCAAGGCTGCCACCAATGACTTCTCCAACCTCATAGGTAAAGGAGGCTTTGGAGATGTCTACAAAGGGGAGTTACCAGACCACAGGGTGGTGGCAGTGAAGTGCCTCAAGAATGTCGCAGGAGGAGAGGAGTTTTGGGCTGAAGTCAGAATCATTGCCAGAATGCACCACCTCAACTTGGTCAGGCTCTGGGGCTTCTGTGCTGAAAAAGGCCAAAGGATACTTGTGTATGAACACATCCCTGGTGGCTCATTGGACAAGTATCTCTTCAGGATCAAGTCTCATCTTCCCAAAGACCAATCAAGTCCTCAACCAAGGCCTGTTTTGGATTGGAGCATGAGGTACAGAATTGCCCTTGGTGTGGCAAGGGCTATTGCATATCTACACGAGGAGTGTTTGGAGTGGGTTTTGCACTGTGACATAAAGCCTGAGAACATTTTACTTGGGGATGATTTTTGTCCTAAGATTTCAGATTTTGGGTTGGCCAAGTTAAGGAAAAAAGAGGACATGGTGACCATGTCAAGGAGGAGGGGCACTCCAGGGTACATGGCACCAGAATGGATCACTGCTGACCCAATTACTGCCAAGGCTGATGTATATAGCTTTGGGATGGTGCTGTTGGAGCTTGTGAGTGGGATCAGGAACTTTGAGATCCAAGACTCTGTGGTTAGAAGCGAAGAGTGGTACTTCCCTGGTTGGGCTTTTGATAAGATGTTTAAGGAGATGAGAGTGGAGGAGATTCTGGATGGCCAGATTAGGGAGGCTTATGACAGTAGGGCCCACTTTGATATGGTTAATAGGATGGTCAAGACTGCCATGTGGTGCCTACAGGATAGGCCCGAGTTGAGGCCCACTATGGGGAAGGTGGCCAAGATGTTGGAAGGGACTGTGGAGATCACTGAGCCCAAGAAGCCCACTGTTTTCTTCCTTGGGGAAGAGTAG 2373 0.4855 MALCTPSFIFLSFFLFLFNLQPSLSQQQQQLTSFNISHSPWHPSQNRTLLSPNKNFTAGFFPLPNSPNLFTFSIWYSKVPITANPLVWSSKTQVNTSGSLVITPKGELFLDGSPFQDASNASSTSNSTQLVLQNDGNLVFGNWTSFKNPTNTVLPNQNFSTGIELHSSNGKYRFIKSQFLVLNSTNDQYYSTPSPLLSMDDAGKMTMAVNSFLTSDYGDPRFRKLVLGDDGNLRIYSFYPEPQNQWVEVWKGIWEMCKIIGRCGPNAICVPTEDLNISTYCVCPSGFSPNPGGPEEGCKRKAPLSQHTHFVRLDYVNYTSDGSVNQINAENFTICESRCSTDKTCLGFGFKYDGSGFCVLLKGTELRYGYWSPGTEAALFLKVDQSESASSNFIGMTEVMQTTCPVNISLPLPPKDSNTTARNIAIICTLFAAELIVGVAFFWSFLKRYIKYRDMATTLGLELLLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVAGGEEFWAEVRIIARMHHLNLVRLWGFCAEKGQRILVYEHIPGGSLDKYLFRIKSHLPKDQSSPQPRPVLDWSMRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITAKADVYSFGMVLLELVSGIRNFEIQDSVVRSEEWYFPGWAFDKMFKEMRVEEILDGQIREAYDSRAHFDMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEITEPKKPTVFFLGEE 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00192 790 SMART blect_4 44 149 IPR001480 -
Cca06g00192 790 Gene3D - 41 148 IPR036426 -
Cca06g00192 790 SUPERFAMILY Protein kinase-like (PK-like) 467 771 IPR011009 -
Cca06g00192 790 ProSiteProfiles PAN/Apple domain profile. 298 384 IPR003609 -
Cca06g00192 790 ProSiteProfiles Bulb-type lectin domain profile. 34 153 IPR001480 -
Cca06g00192 790 Pfam Protein kinase domain 487 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00192 790 PANTHER OS07G0415500 PROTEIN 9 790 - -
Cca06g00192 790 Gene3D Phosphorylase Kinase; domain 1 463 556 - -
Cca06g00192 790 Pfam S-locus glycoprotein domain 219 290 IPR000858 GO:0048544
Cca06g00192 790 SMART serkin_6 483 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00192 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 163 IPR036426 -
Cca06g00192 790 PANTHER OS10G0101000 PROTEIN 9 790 - -
Cca06g00192 790 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Cca06g00192 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Cca06g00192 790 ProSiteProfiles Protein kinase domain profile. 483 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00192 790 Gene3D Transferase(Phosphotransferase) domain 1 557 782 - -
Cca06g00192 790 PIRSF SRK 2 790 IPR024171 GO:0004674
Cca06g00192 790 CDD STKc_IRAK 489 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00192 Cca-Chr6 4659592 4662216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00192 397 773 Receptor kinase-like Gene Family AT4G18250 38.046 2.64e-77 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca06g00192 Pkinase 3e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00192 06 4659592 4662216 Cca06g00192 06 4659592 4662216 ECH