Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00191 ATGAAAACCCATGTGGGTTTTGTTCCATGGGTTGTTGTGTTGTTGTTTTGTGTGGGGTTTGAGTGTGCATGGTGCCAGGGTGATGGTGATGTTGGTGTGATGAACACGCTGAAGAAGGCCATCACAGCACCCAATGATCTTAAATGGGATGACGCAGATGTGTGTAAATGGTCTCACGTTCAGTGCAACACCATGAAGAGGGTCACCGCAATTCAAATTGGGGGACATAGTTTGAAGGGTACTCTGCCTAAGGAACTGGTGAAGCTCTCGGAGTTGACACGTTTTGAGTGCATGAGCAATGGCTTCACTGGGCCGTTTCCTAGCATGCCGAATTCCCTTGTGACTCTGCTCATCCACAACAACAATTTCGAATCCATGCCGGTGGATTTCTTCGCCGGCATGACCAATTTGCAAGAAGTGAGCATTGGCTACAACCCTTTTCCCAATTGGGAGATTCCTGGTGGCCTCAAGGAGTGTGTGGCTCTGAGGAGTTTCTCTGCAATCAGTGCTGGCCTTGTGGGGAAAATCCCAGATTTTTTTGGGAAAGATGGTCCCTTGCCAGGTTTGGTTACTCTTAGCTTGAGTTTTAATTCTCTTGAGGGAGGGTTGCCTGCAACTCTCTCTGGGAGTGCTATAGAGTACCTTTGGCTGAATGGTCAGCAAAGTAGTGGCAAACTCAATGGTACCCTTGATGTTTTGAAGAACATGACATCTTTGAAACAAATTTGGGTGCATGGTAACTCATTCACAGGTCCTATACCGGACTTTTCTAACCATGATCAACTGTTTGATGTGAGTTTGAGGGATAACCAGCTGACTGGGGTTGTTCCACCCTCTCTCACTGCTCTTCCTGCTCTTCGAGTTGTGAATTTGACCAATAACATGCTTCAAGGATCGCCTCCTGTGTTCAAAGATGGAGTGAGGGTTGATAACGATTTGAAGTCGGGGTCCAATAGTTTCTGCACCAAGGATGTTGGTAAGCCATGTTCTCCCCTTGTGGATCTTTTGTTGTCTGTTGTTGAACCTTTCGGTTATCCTCTAAGATTTGCTCAGAATTGGAAGATGAATGACCCTTGTGGTGATGATGGTAATAATTGGATGGGGATTGTTTGTTCAAATGGTAATGTTACCACTATTAATTTTCAAGACATGAATCTCTCTGGCAACATTTCTCCCAGTTTTGCCAAGCTTACATCTGTGACAAAGTTGCTTCTGGCTAACAATAACCTCACTGGTACCATACCAAGTGAACTCACTAGTATGCCTCTTTTGACATTGCTTGATGTCTCCAATAATCAATTGAATGGTAAAGTGCCATCTTTCCGTGTAGATGTAGTTCTTAAGACCAATGGGAATCCTGATATTGGAAAGGATAAACCTCATGCCCCGCCTGGCTCGGATTCTGGGAGCAAATCTGGAGGTGACGGTAAGAAACTTCATACTGGAGCAATTGTTGGCACTGTGGTGGGCGGTGTCAGTTTACTTGGTATAGGGGCTTTGGTGTTTATGATTTATGGTAGAATACATAAAAACGCCAGAAAACTTCAACGTCCTACAACAATAGTGGTACATCCTCGTCATTCAGGAGATGGAAATGGTTTGAAGATAAGTGTTTCAGGTGCAGGTTCTGGTGCTGCTGGTAGTGGAGGAACCGGTGTATTTAGTCCAACTAGTAGTGTTCAACATGTGGAAGCTGGTAATATGGTGATTTCAATCCAAGTCTTGAAGGAAGTAACAAACAATTTCAGTGAAGAAAACATATTGGGGAGGGGTGGATTTGGCACTGTGTACAAAGGAGAATTGCATGATGGATCAAAGATTGCAGTGAAAAGGATGGAATCTGGAGTGATGGGTGAGAAGGGACTGACTGAGTTTGAATCTGAAATTAAAGTACTTACTAAGGTTCGACACAGGCATTTGGTTGCACTTGAAGGCCATTGCTTGGATGGAAATGAGAGGCTTCTTGTGTATGAATACATGCCTCAGGGTCCTCTCAGTAAACATTTATTTGAATGGAAAGAGGATGGGTCACAACCACTAGATTGGAAGAGAAGGCTGTCCATTGCATTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCCCAACAAATTTTCATCCATAGGGATCTAAAACCATCAAACATCTTGCTTGCGGATGATATGCGGGCCAAAGTATCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAGACCTCATTCGAGACTAGGCTTGCTGGAACTTTTGGATATTTAGCACCGGAGTATGCAGTCACTGGACGAGTTACAACGAAGGTCGACGTATATAGCTATGGGGTGATTCTCATGGAGATGATAACAGGAAGGAGAGCAATTGACAACAGCCAACCAGAAGAGAATGTCCACCTTGTTACATGGTTTAGAAGGATGCTACTGAATAAAGACTCATTTGGAAAGCTGATTGACCCCAATATGGCTGTTGATGAGGAGGCCATACCTAGTGTAAGGACTGTGGCCGAGTTGGCCGGCCACTGTTGCGGGAGGGAGCCTTACCAGCGGCCGGACATGAGTCATGTGGTGAATGTCCTGGCACCTCTTGTTGAGATTTGGAAGCCTTCAGAAGCAGATGATGATGACATTTATGGGATTGACTTGGATTTGACCTTACCTCAAGCACTCAGTAAGTGGCAGGCTGTTGAAGGAAGGAGCACCTTTGATGTATCTTCCTCTTCATCAATGCTTACTAGTGGAGATAATACACAGTCTAGCATACCAACTAGGCCTTCTGGATTTGCTGATAGCTTTACTTCCGGTGATGGAAGATGA 2811 0.4482 MKTHVGFVPWVVVLLFCVGFECAWCQGDGDVGVMNTLKKAITAPNDLKWDDADVCKWSHVQCNTMKRVTAIQIGGHSLKGTLPKELVKLSELTRFECMSNGFTGPFPSMPNSLVTLLIHNNNFESMPVDFFAGMTNLQEVSIGYNPFPNWEIPGGLKECVALRSFSAISAGLVGKIPDFFGKDGPLPGLVTLSLSFNSLEGGLPATLSGSAIEYLWLNGQQSSGKLNGTLDVLKNMTSLKQIWVHGNSFTGPIPDFSNHDQLFDVSLRDNQLTGVVPPSLTALPALRVVNLTNNMLQGSPPVFKDGVRVDNDLKSGSNSFCTKDVGKPCSPLVDLLLSVVEPFGYPLRFAQNWKMNDPCGDDGNNWMGIVCSNGNVTTINFQDMNLSGNISPSFAKLTSVTKLLLANNNLTGTIPSELTSMPLLTLLDVSNNQLNGKVPSFRVDVVLKTNGNPDIGKDKPHAPPGSDSGSKSGGDGKKLHTGAIVGTVVGGVSLLGIGALVFMIYGRIHKNARKLQRPTTIVVHPRHSGDGNGLKISVSGAGSGAAGSGGTGVFSPTSSVQHVEAGNMVISIQVLKEVTNNFSEENILGRGGFGTVYKGELHDGSKIAVKRMESGVMGEKGLTEFESEIKVLTKVRHRHLVALEGHCLDGNERLLVYEYMPQGPLSKHLFEWKEDGSQPLDWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLADDMRAKVSDFGLVRLAPEGQTSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRRAIDNSQPEENVHLVTWFRRMLLNKDSFGKLIDPNMAVDEEAIPSVRTVAELAGHCCGREPYQRPDMSHVVNVLAPLVEIWKPSEADDDDIYGIDLDLTLPQALSKWQAVEGRSTFDVSSSSSMLTSGDNTQSSIPTRPSGFADSFTSGDGR 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00191 936 Gene3D Ribonuclease Inhibitor 28 327 IPR032675 -
Cca06g00191 936 Gene3D Ribonuclease Inhibitor 332 459 IPR032675 -
Cca06g00191 936 SUPERFAMILY Protein kinase-like (PK-like) 558 866 IPR011009 -
Cca06g00191 936 Gene3D Transferase(Phosphotransferase) domain 1 660 876 - -
Cca06g00191 936 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Cca06g00191 936 SUPERFAMILY L domain-like 32 304 - -
Cca06g00191 936 Pfam Protein kinase domain 583 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00191 936 PANTHER OSJNBA0070M12.3 PROTEIN 10 936 - -
Cca06g00191 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Cca06g00191 936 SMART serkin_6 582 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00191 936 MobiDBLite consensus disorder prediction 902 936 - -
Cca06g00191 936 ProSiteProfiles Protein kinase domain profile. 582 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00191 936 MobiDBLite consensus disorder prediction 449 476 - -
Cca06g00191 936 Gene3D Phosphorylase Kinase; domain 1 553 659 - -
Cca06g00191 936 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 10 936 - -
Cca06g00191 936 Pfam Leucine rich repeat N-terminal domain 335 372 IPR013210 -
Cca06g00191 936 Pfam Leucine rich repeat N-terminal domain 30 63 IPR013210 -
Cca06g00191 936 CDD STKc_IRAK 588 861 - -
Cca06g00191 936 SMART LRR_typ_2 109 133 IPR003591 -
Cca06g00191 936 SMART LRR_typ_2 283 305 IPR003591 -
Cca06g00191 936 SMART LRR_typ_2 186 209 IPR003591 -
Cca06g00191 936 SMART LRR_typ_2 397 421 IPR003591 -
Cca06g00191 936 SUPERFAMILY L domain-like 335 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00191 Cca-Chr6 4630619 4634828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00191 68 872 Receptor kinase-like Gene Family AT1G55610 30.035 2.79e-81 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca06g00191 Pkinase 3.7e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00191 06 4630619 4634828 Cca06g00191 06 4630619 4634828 ECH