Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00188 ATGGGTCTTAGTTTGAAGATGCAGAGCCACCATCCTGTGGCTTTGAGGTTGCATGATCAAATGGGGTCTAAAAGAAAGTACACTTTTATTCAGGCTCATAGAGCTTGTCTTCCAAAGTTTTTGCTGCTGTGGATCCTGCTAATGGCTTTGATCAGTTGGTGTATCTATAGCAAAATGGATGATGACACTAAAGTCAGAAGGAAAGAGGTGTTGGGTAGTCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAGTTTAGTGTGAGTGTCAATCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTTCATTACTACAGATACCCTTCTGCCATTGACCAGGAAACCTTTGCTGAGTATACAGCCCGGACAGCTTTTGAACGGCCATTACTGAGTGGTGTGGCCTATGCACAAAGAGTTGTTAACTCTGAGAGGGAGAGATTTGAGAAAGAACATGGATGGGTTATAAAGACAATGAAAAGGGAATCTTCACTGGTTAGAGACGAGTATGCGCCCGTTATATTTGCACAAGAAACTGTCTCATATCTTGAGTCTATTGATATGATGTCTGGGGAGGAGGACAGGGAAAACATTTTTAGGGCTAGAGCCACTGGAAAAGCGGTTCTGACTAGCCCTTTCAGGCTGTTGGGTTCTCACCATCTTGGTGTTGTTTTAACATTCCCTGTGTACAAGTCTAAGCTCCCTCAGGAGCCAACAGTGGAAGAACGCATTGAAGCAACTGCAGGATATGTTGGAGGGTCCTTTGATGTTGAGTCCCTTGTAGAGAATTTACTTGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGATATCACAAACTACACTAATCCCCTAATCATGTATGGCAACCAATATGAAGAAGGCAGCGATATGTCTCTTGCCCATGAAAGCAAGCTTGATTTTGGAGATCCATACAGGAAACATCAGATGATATGTAGGTATCATCAGAAGGCACCAGCAAATTGGATAGCTCTTACCACAGCATTCCTTTTCTTTGTGATTCTTCTATTAGTGGGTTACATTTTATATGGGGCTGGAAATCATATTGTCAAAGTCGAAGATGATTTTCATGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCCCAGTTTCTAGCTACAGTCTCTCATGAAATTAGAACACCCATGAATGGTATTTTAGGAATGCTTGCTCTGCTTCTAGATACAGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTAATAACATTAATAAATGAGGTGCTGGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAGGCTGTTCCATTTGATCTTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAATCTAGGCACAAAGGTTTAGAGCTGGCCGTGTTCGTTTGTGATAAAGTTCCAGATATTGTCATGGGAGATCCGGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTTACTGAACAAGGACATATATTTGTTAAAGTCCATCTGGCGGAAAATAGAAAGTCCATAATGAATGGAAAACATGAGACTTTTATAAATGGAGAATCAGATGAAGTATTCCATATATGTGGTGATTATCATTTCAAAACCTTAAGTGGATGTGAAGCAGCTGATGAACGGAACTGCTGGGATAATTTTAAGCATCTAATTGCTGTTGAAGAATTTTGCTTCGATTCATCAGGAGAAACAGCAGATGGTTGTGAATCATCCGAGCAAGTCACGTTAAGGGTATGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCACAGGACACGATATTCATGCCTTTTGTGCAGGCTGACAGCTCAACTTCACGAAATTATGGGGGTACTGGTATCGGCTTGAGTATCAGTAAATGCCTAGTTGAACTAATGGGGGGTCAAATAAATTTCATAAGTCGACCCCAGGTAGGGAGCACTTTTTCCTTCACTGCAGTTTGTGGAACATTTAAGAAAAGTACAGTTAGTGACTTGAAGAATAATTTGGAAGATCTTCCTTCAAGTTTTAGAGGGCTGAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTGGGGATACTAGTTAAAGTTGCAAATAGCATCAGCAAGGCTGTTGCTTTATGTGGTAAAAGTGGTTCTTTGACATCAGGAATGTTCCAGCCTGATATTATCATGATTGAGAAGGACGCATGGATTTCTAGAGAGGATGGGATTTTCGATATGTGGAAACCAGACTGGAAAAAGAATGATCATATGTTTGAGATGCCTAAAATGATCCTTCTGGCAACCAATATTAGTAATACTGAATTTGATAAAGCTAAGGCCGCCGGTTTCACTGATACGGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAATTTTGGGGATGGGGAAGAAGAGGAAGCTAGGAAAAGACATGCCTAATGGTTCTTCCTTTCTACATAGCCTTCTATATGGAAAGAAAATCTTGGTGGTTGATGACAATGGGGTAAACCGAAGGGTTGCAGCAGGGGCACTTAAAAAGTTTGGAGCTGATGTGAAATGTGCTGAAAGTGGCAAAGCTGCACTTGAAATGCTTCAATTACCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGATTTGAAGCAACCAGCCGAATTCGAATGATGGAGAGCAAGGCAAATGAGGAGATGAATAATGGGAGTGAGTGGCATGTGCCTATATTGGCCATGACAGCTGATGTGATCCATGCTACATACGATGAATGCGTGAAATGTGGCATGGATGGATATGTCTCAAAGCCATTCGAGGAAGAAAATCTGTATCAGGAAGTTGCAAAGTTTTTCAAATCCAAGTCCATCTCAGACTCTTAA 2988 0.4153 MGLSLKMQSHHPVALRLHDQMGSKRKYTFIQAHRACLPKFLLLWILLMALISWCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKEHGWVIKTMKRESSLVRDEYAPVIFAQETVSYLESIDMMSGEEDRENIFRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQEPTVEERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNYTNPLIMYGNQYEEGSDMSLAHESKLDFGDPYRKHQMICRYHQKAPANWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVCDKVPDIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLAENRKSIMNGKHETFINGESDEVFHICGDYHFKTLSGCEAADERNCWDNFKHLIAVEEFCFDSSGETADGCESSEQVTLRVCVEDTGIGIPFSAQDTIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVCGTFKKSTVSDLKNNLEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGILVKVANSISKAVALCGKSGSLTSGMFQPDIIMIEKDAWISREDGIFDMWKPDWKKNDHMFEMPKMILLATNISNTEFDKAKAAGFTDTVIMKPLRASMVAACLQQILGMGKKRKLGKDMPNGSSFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATSRIRMMESKANEEMNNGSEWHVPILAMTADVIHATYDECVKCGMDGYVSKPFEEENLYQEVAKFFKSKSISDS 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00188 995 Gene3D CHASE domain 112 328 IPR042240 -
Cca06g00188 995 Gene3D - 356 445 - -
Cca06g00188 995 SUPERFAMILY CheY-like 858 987 IPR011006 -
Cca06g00188 995 ProSiteProfiles Response regulatory domain profile. 703 833 IPR001789 GO:0000160
Cca06g00188 995 PANTHER HISTIDINE KINASE 4 22 991 - -
Cca06g00188 995 SMART REC_2 859 983 IPR001789 GO:0000160
Cca06g00188 995 Gene3D - 854 994 - -
Cca06g00188 995 Gene3D - 697 837 - -
Cca06g00188 995 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 436 674 IPR036890 -
Cca06g00188 995 SMART HisKA_10 382 447 IPR003661 GO:0000155|GO:0007165
Cca06g00188 995 Pfam CHASE domain 111 291 IPR006189 -
Cca06g00188 995 ProSiteProfiles Response regulatory domain profile. 860 987 IPR001789 GO:0000160
Cca06g00188 995 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 991 - -
Cca06g00188 995 Gene3D - 59 111 - -
Cca06g00188 995 CDD HATPase_EvgS-ArcB-TorS-like 499 675 - -
Cca06g00188 995 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 368 448 IPR036097 GO:0000155|GO:0007165
Cca06g00188 995 ProSiteProfiles Histidine kinase domain profile. 389 674 IPR005467 -
Cca06g00188 995 CDD REC_hyHK_CKI1_RcsC-like 861 983 - -
Cca06g00188 995 ProSiteProfiles CHASE domain profile. 108 321 IPR006189 -
Cca06g00188 995 SMART HKATPase_4 494 679 IPR003594 -
Cca06g00188 995 Pfam His Kinase A (phospho-acceptor) domain 382 447 IPR003661 GO:0000155|GO:0007165
Cca06g00188 995 CDD HisKA 382 443 IPR003661 GO:0000155|GO:0007165
Cca06g00188 995 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Cca06g00188 995 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Cca06g00188 995 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Cca06g00188 995 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Cca06g00188 995 SUPERFAMILY CheY-like 699 834 IPR011006 -
Cca06g00188 995 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 675 IPR003594 -
Cca06g00188 995 Pfam Response regulator receiver domain 861 983 IPR001789 GO:0000160
Cca06g00188 995 Gene3D - 446 680 IPR036890 -
Cca06g00188 995 SMART CHASE_2 108 293 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00188 Cca-Chr6 4566186 4574550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00188 11 995 Histidine Kinase Gene Family AT2G01830 70.671 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca06g00188 HATPase_c 3.6e-30 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00188 06 4566186 4574550 Cca06g00188 06 4566186 4574550 ECH