Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00185 atggttgcagGCCTTACAAAGGCTGATCCTGATCCAGGTTTTGTTTCTCTTGATTTGACCCTCAACTTCAATCTCACTGATGAAGAGTTGTTGAAAGATGAAGAGTTGTTGAAAGGCACAAGTGACGCCAACAGTGAAGTAGGAACCAAAAACCACTCAGCCTCAGCAAATCCTAGAGTTTTCTCTTGTAACTATTGCCGGCGCAAGTTCTTCAGCTCACAGGCATTGGGAGGACACCAGAATGCTCACAAGAGGGAGAGGACAATGGCAAAGCGCGCAATGCGAATGGGAATGTTCACCGGAAGGTGCACAAGCCTAGCATCTCTGCCACTCCATGGTTCCACTTTTCGGTCCCTTGGACTTGAAGCTCACGCAGCAATGCACCAACACCAAGGACATGTGCATCCACTGAAGGCTCCTGATGTGAGAGCTGCAGCGAAATTCGGTAAAGACTGCTTGAGGCCGACTCCGATCTTTGTTGAAGATGATGATGTTGGTCTGTTTTGGCCTGGCAGTTTCAGGCAGATAGATAAAAGGAGTAATGGTGGTGCTAATTTGAAGCATGATGATCATGCTCATAATTCAGATACTAGTTTTATAGCAACTGCACCTCCAGCACAAACATCTGCATCTCCTGATCTCACTCTGAGGCTTTAG 657 0.4627 MVAGLTKADPDPGFVSLDLTLNFNLTDEELLKDEELLKGTSDANSEVGTKNHSASANPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTGRCTSLASLPLHGSTFRSLGLEAHAAMHQHQGHVHPLKAPDVRAAAKFGKDCLRPTPIFVEDDDVGLFWPGSFRQIDKRSNGGANLKHDDHAHNSDTSFIATAPPAQTSASPDLTLRL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00185 218 SUPERFAMILY beta-beta-alpha zinc fingers 58 89 IPR036236 -
Cca06g00185 218 MobiDBLite consensus disorder prediction 180 218 - -
Cca06g00185 218 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cca06g00185 218 PANTHER ZINC FINGER PROTEIN JAGGED 5 218 IPR045320 GO:0003700
Cca06g00185 218 Gene3D Classic Zinc Finger 38 102 - -
Cca06g00185 218 MobiDBLite consensus disorder prediction 196 218 - -
Cca06g00185 218 MobiDBLite consensus disorder prediction 181 195 - -
Cca06g00185 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Cca06g00185 218 PANTHER ZINC FINGER PROTEIN 3-RELATED 5 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00185 Cca-Chr6 4399040 4399796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00185 55 218 C2H2 Transcription Factor Family AT1G66140 43.455 4.92e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g00185 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00185 06 4399040 4399796 Cca06g00185 06 4399040 4399796 ECH