Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00184 ATGGTTAGAGGCAAAGATCTTGTTCCCAATGGCGTTGACTCCGACGGGGAGAACTCAAGGAGCAAGGTGTCACAGCAGTATCATGATTTCGTTCATGGCAAGAAGGTTGGTGTTGATGAGTTTCAGTCATCACCCACAAAAGTTGCCATTTCTGGGTTGCAAGAGTTGACCCTCAGCTACCTCTGTGATAACCCAAAATTGGGTCTTGTTGAAAGCGGAATTGGTGATAGAAGCTTGGTGAAGGGCAAGGAAATTGTAGTTTGTGGGAATTCAGATCAAGATGAAAAAGCTTCAACGTTTGGTGGTGCTAGACAGTGTCTCGAACATGATTGTATTCCAAGGAGAATAGTTGTTGGAAACCAAAACCATGATCAAGATGAGAAATGGGTAGAGAGGGATTTTTTGAGTTTGAGTGAAAGTAGGGAGAATTCTTCGAAGAGATCCATTGAGGAAGAGTGTAACAGAGAGAAGAATGGTGGCAACAAGCAGCAGAAGCTTGAGACTCTTGGTCTCTCTCTTGCTTTGCCTGATGTGTCACTCTCTCTCACAGCATCAAACGCTTTGAAAAATGGTGACCAAGTTGTTAGGCCAAAGGCTAGTAGGCAATCTGCAAGGACCACAACTACGATCAATTCATGTTCAAATGATTACACAGGTGGTGCTTCTTTGTCTCAATCTTATTCTCACCCTTTCTCACACAACCCAAGTTGCTCACTTACCCGTAATTCAACGGAGAATTTTGAGTATTCACTCAGCAAAGATGATCAAATTTGGCATTGTGGGGAAGGGACTAATGGGTCTGTACATAGTAGGTTCAAGCCAATAGGTGATGGGGTTGCTTTCGCCAATCATTCCTTTATGCAAGGGAATAGTCATTATAAGGCTACTAGTTCAGATAACCAATCTTTTTACCCTTCAGAATTGCCTGCAAGAGTGAGATTTGAAGCTCAGTCAGAGGGCTCAAGGGGAAAGAATTCCGAAAATCTGAGAGGCTTGGAAGGTATGGATGGTGGGAAGATGATGAAGTTTTCTACATCAGAGAGAGTTCTGAGAGAAATTGTGTCTGATTCTATCCCAGCGATGGCATTGACATTTCAGGAGTTCACTGATGAAGCCATAACATCAATTAAGGAACACTTGAAAGGTCTCATTGACATGCCAAATAAGAAAGGGGAATTAGAAAACCTCCAGAACCGCCTCGGCAGAAGATCTGACCTCACCAGAGAGATCCTTTCAAAGTGTCATAAGGATCAGCTAGAGATTTTGGTTGCTATCAAGATGGGGCTTGGGAGTTTCTTGTCCGGTGATTTCCAATTCTTGGAGATGGTGGAGGTTTTCTTCCACAAGAGATGTAGAAATGTGAACTGCAAGAGCTTGCTGCCTGTTGATGACTGTGACTGCAAGATGTGCTCAACAAACAAGGGTTTTTGCAGTTCTTGCATGTGTCCTGTGTGTTTTAACTTTGATTGTGCAAGTAACACTTGTAGTTGGGTTGGTTGTGACGTTTGTTCCCACTGGTGTCATGCTGCATGTGCCATTCAGAGGAATCTAATCAAACCCGGGCCTAGCTTGAAGGGTCCTTCTGGGACCTCTGAGGTGCAGTTTCATTGTATTGGCTGTGGACATGCATCAGAAATGTTTGGCTTTGTTAAAGACGTCTTTGTGTGTTGTGCCAAGGAGTGGAGCCTAGAAACCTTGATCAAAGAGCTTGGCTGTGTGAGAAGGATTTTCCAGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATTAAGACGGATGATATGCTGTTAAAGCTTCAAGCTAAACTCGTTTCTCCTTTGGATGCCTGCAACTACATAGTACAGTTTTTCAGCTACGCAGATGGCATGTCAGACTTTCCTGCTTCTGGCATATCCTCAAAGGATTTGTCAACATCTAAGGCTAACCTTCCAATGGACACAACATCATCTCTTCCACAATCTATTTCTCTAATACCAAAATACACTCATGACATGAGCTACTCAAGGTTAAATGATCTTCAACAGAGAGACATCAAAACTTCCCTCCCAAGTGAACATACAAATGAGACAGATTTCCACTTTGAGGCTTTATTGAGGAAAGAAGGGTTTGAAAGCTTGGAGAGCATTGTGCGGATAAAAGAGGCCGAAGCGAGAATGTTCCAGAGCAAGGCAGATGAGGCGAGGAGAGAAGCAGAAGGGTTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAAGAGTATGCAGAAAGGCTTGGCAAGCTTTGCTTGCATGAGGCAGAGGAAAGGAGGAAAAAGAAATTTGAAGAACTCAATGTCTTGCAAAGTTCCCACTATGATTACTTCAACATGAAAAGTAGAATGCAAGATGAGATTCATGGTTTGTTGAAGAGAATGGAGGCAACAAAGCAGCAATGA 2421 0.4325 MVRGKDLVPNGVDSDGENSRSKVSQQYHDFVHGKKVGVDEFQSSPTKVAISGLQELTLSYLCDNPKLGLVESGIGDRSLVKGKEIVVCGNSDQDEKASTFGGARQCLEHDCIPRRIVVGNQNHDQDEKWVERDFLSLSESRENSSKRSIEEECNREKNGGNKQQKLETLGLSLALPDVSLSLTASNALKNGDQVVRPKASRQSARTTTTINSCSNDYTGGASLSQSYSHPFSHNPSCSLTRNSTENFEYSLSKDDQIWHCGEGTNGSVHSRFKPIGDGVAFANHSFMQGNSHYKATSSDNQSFYPSELPARVRFEAQSEGSRGKNSENLRGLEGMDGGKMMKFSTSERVLREIVSDSIPAMALTFQEFTDEAITSIKEHLKGLIDMPNKKGELENLQNRLGRRSDLTREILSKCHKDQLEILVAIKMGLGSFLSGDFQFLEMVEVFFHKRCRNVNCKSLLPVDDCDCKMCSTNKGFCSSCMCPVCFNFDCASNTCSWVGCDVCSHWCHAACAIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHASEMFGFVKDVFVCCAKEWSLETLIKELGCVRRIFQGSEDRKGKELHIKTDDMLLKLQAKLVSPLDACNYIVQFFSYADGMSDFPASGISSKDLSTSKANLPMDTTSSLPQSISLIPKYTHDMSYSRLNDLQQRDIKTSLPSEHTNETDFHFEALLRKEGFESLESIVRIKEAEARMFQSKADEARREAEGFQKMIKTKAAQMEEEYAERLGKLCLHEAEERRKKKFEELNVLQSSHYDYFNMKSRMQDEIHGLLKRMEATKQQ 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00184 806 PANTHER PROTEIN OBERON 3 1 806 - -
Cca06g00184 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 364 386 IPR004082 -
Cca06g00184 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 403 418 IPR004082 -
Cca06g00184 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 442 463 IPR004082 -
Cca06g00184 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 488 508 IPR004082 -
Cca06g00184 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 561 580 IPR004082 -
Cca06g00184 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 704 724 IPR004082 -
Cca06g00184 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 743 765 IPR004082 -
Cca06g00184 806 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g00184 806 CDD PHD_OBE1_like 481 540 - -
Cca06g00184 806 Pfam Coiled-coil region of Oberon 672 797 IPR032535 -
Cca06g00184 806 MobiDBLite consensus disorder prediction 140 162 - -
Cca06g00184 806 Pfam PHD - plant homeodomain finger protein 451 574 IPR032881 -
Cca06g00184 806 Coils Coil 786 806 - -
Cca06g00184 806 Coils Coil 758 778 - -
Cca06g00184 806 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 806 IPR004082 -
Cca06g00184 806 Coils Coil 710 730 - -
Cca06g00184 806 MobiDBLite consensus disorder prediction 140 163 - -
Cca06g00184 806 MobiDBLite consensus disorder prediction 316 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00184 Cca-Chr6 4367116 4370599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00184 451 686 PHD Gene Family AT5G57380 23.305 1.67e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00184 06 4367116 4370599 Cca06g00184 06 4367116 4370599 ECH