Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00180 ATGGGGTTCCTCTTATGTTGTTTTCTGCTTTTTCTTGTCATGGTTACTTCTGGGTCACCCACAAACTTCCCCATCATGGCCTTTGAAGATGGCTATACCCCTTTGTTTGGTGACCAGAATTTGGTGATCCAGAGGGATGGCAAATCAGTTCATCTTTCACTTGATGAAAGGACAGGTTCTGGATTTGTGTCTCATGATCTTTACCTTCACGGCTATTTCAGTGCTTCAATCAAGTTGCCTGGTGATTACACTGCTGGAGTTGTGGTTGCTTTTTATATGTCAAATGGTGACATGTTCCAGAATAACCATGATGAGATAGACTTTGAGTTTTTGGGGAACATTAGAGGCGAAGACTGGAGGGTTCAGACCAATGTTTATGGCAATGGAAGCACTAACATTGGTAGAGAGGAAAAATATGGCCTATGGTTTGATCCTACTGAGGATTTCCATCAGTACAGTATCCTCTGGGCAGATTCTAAGATCATATTTTATGTTGATGATGTTCCTATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCCTCAAAGCCAATGACTTTGTATGCCACCATATGGGATGGATCTGATTGGGCAACCAATGGAGGGAAATATAGAGTGAATTACAAGTATGCACCCTTTGTTGCTGAGTACTCTGACTTTGTGCTGCATGGTTGTGCAGTTGATCCCATTGAACTTGTAGCCAAGTGTGATGATGATGTACAAGGCTCTGAGGCAATAGTAGTTCCTTCTAGTGTCACCCCAGTACAAAGAGTCAAAATGAGAAACTTCAGGTTGAAGCACATGACATACTCTTACTGCTATGACACACTAAGATACAAAGTCCCTCCTCCAGAGTGTGTCATCAACCCCAAAGAGGCTGAAAAGCTAAGAAAATCTGATCCTATCACTTTCACCAATGGCCAGCGCCACCATGGAAAAGGACACCGCCACCGCAGTAGAGGAAGTCAGGAAGAGGCTACAAATTCATTTTAA 1002 0.4281 MGFLLCCFLLFLVMVTSGSPTNFPIMAFEDGYTPLFGDQNLVIQRDGKSVHLSLDERTGSGFVSHDLYLHGYFSASIKLPGDYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGEDWRVQTNVYGNGSTNIGREEKYGLWFDPTEDFHQYSILWADSKIIFYVDDVPIREVKRTESMGGDFPSKPMTLYATIWDGSDWATNGGKYRVNYKYAPFVAEYSDFVLHGCAVDPIELVAKCDDDVQGSEAIVVPSSVTPVQRVKMRNFRLKHMTYSYCYDTLRYKVPPPECVINPKEAEKLRKSDPITFTNGQRHHGKGHRHRSRGSQEEATNSF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00180 333 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 15 220 IPR000757 GO:0004553|GO:0005975
Cca06g00180 333 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 289 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca06g00180 333 CDD GH16_XET 27 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca06g00180 333 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 311 IPR044791 GO:0004553
Cca06g00180 333 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 293 IPR013320 -
Cca06g00180 333 Pfam Glycosyl hydrolases family 16 31 212 IPR000757 GO:0004553|GO:0005975
Cca06g00180 333 MobiDBLite consensus disorder prediction 300 333 - -
Cca06g00180 333 Gene3D - 16 289 - -
Cca06g00180 333 PIRSF EndGlu_transf 1 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca06g00180 333 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 4 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00180 Cca-Chr6 4243436 4246664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00180 1 329 Glycoside Hydrolase AT1G14720 63.964 2.91e-164 459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00180 06 4243436 4246664 Cca06g00180 06 4243436 4246664 ECH