Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00173 ATGTCAACTTTGACCATACCTCCAGTGATACCATCGCCTAGGGAAGATGCTATCAAGTTGCATAAAGCTTTCAAAGGTCTTGGTTGTGACACATCTAAAGTTATCAAAATCCTTTCTCATAGAAATGTAGAACAACGTAGCCTCATTCAACAAGAATACGAAACCAATTACTCTGAACTACTTTCCAAACGAATATCAAAAGAGCTTCATGGGCATGTCAAGAAAGCAGTGTCACTTTGGTTGCATGATCCCCCAACTAGGGATGCTAAGGTTGCAAGAAAAGCCTTAACCACCCCGGTTGTTGATAATCAAGCTATAACAGAAGTAATATGTTCTCGTACCCCATCACAAATAAGGCGAATGAAAGAAGTTTATCTATCAACTTACCACTCCGAACTTGAGAAAGATATTGAAAACCAAACCAGTGGTGATCACAAGAAGTTGTTACTTGCCTATATAAGTACCCCACGTTATGAAGGCCCAGAGTTGGACCTTGAAATAGTAGAAGAGGATGCAAAACTACTTTACAAAGCAGGAGAAAAAAAGTTTGGAACTGATGAAAAGGTCTTCATAAAGATTTTTAGTGAAAAAAGCAGCACACATTTGGCTGCAGTCAACTCTGCTTACATAAATTCACATGGACACTCACTTGAAAAGGCAATAAAGAAAGAAACTTCTGGTTCTTTTGCGAGTGCCCTCTTAACCATACTACGTTGTGCCACTGATCCTGCTATGTACTTTGCCAAGATTTTGCGCAAGTCAATGAAGGGTGTGGGAACCGATGATAAGAGACTAATTAGGGTAATTGTGACAAGGACTGAGATAGACATGTATCAAATAAAAATAGCATATTATAAGAAATATGGAAAACCATTAACACATGCTGTTCGTTCAGATACATCAGGCCATTACAAAGATTTTCTTCTAAATCTTATAGGTTCCGATTATTAG 951 0.3817 MSTLTIPPVIPSPREDAIKLHKAFKGLGCDTSKVIKILSHRNVEQRSLIQQEYETNYSELLSKRISKELHGHVKKAVSLWLHDPPTRDAKVARKALTTPVVDNQAITEVICSRTPSQIRRMKEVYLSTYHSELEKDIENQTSGDHKKLLLAYISTPRYEGPELDLEIVEEDAKLLYKAGEKKFGTDEKVFIKIFSEKSSTHLAAVNSAYINSHGHSLEKAIKKETSGSFASALLTILRCATDPAMYFAKILRKSMKGVGTDDKRLIRVIVTRTEIDMYQIKIAYYKKYGKPLTHAVRSDTSGHYKDFLLNLIGSDY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00173 316 Gene3D Annexin 157 242 IPR037104 GO:0005509|GO:0005544
Cca06g00173 316 Gene3D Annexin 243 315 IPR037104 GO:0005509|GO:0005544
Cca06g00173 316 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Cca06g00173 316 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Cca06g00173 316 PANTHER ANNEXIN 7 316 - -
Cca06g00173 316 PANTHER ANNEXIN 7 316 - -
Cca06g00173 316 Pfam Annexin 87 151 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 Pfam Annexin 171 236 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 Pfam Annexin 16 77 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 Pfam Annexin 246 311 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 SMART annex3 259 311 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 SMART annex3 101 152 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 SMART annex3 184 236 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 ProSiteProfiles Annexin repeat profile. 166 238 IPR018502 GO:0005509|GO:0005544
Cca06g00173 316 SUPERFAMILY Annexin 2 315 IPR037104 GO:0005509|GO:0005544
Cca06g00173 316 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Cca06g00173 316 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Cca06g00173 316 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Cca06g00173 316 PRINTS Annexin family signature 175 201 IPR001464 GO:0005509|GO:0005544
Cca06g00173 316 PRINTS Annexin family signature 255 275 IPR001464 GO:0005509|GO:0005544
Cca06g00173 316 PRINTS Annexin family signature 299 312 IPR001464 GO:0005509|GO:0005544
Cca06g00173 316 ProSitePatterns Annexin repeat signature. 259 311 IPR018252 GO:0005509|GO:0005544
Cca06g00173 316 ProSiteProfiles Annexin repeat profile. 242 313 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00173 Cca-Chr6 4102521 4106786 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00173 06 4102521 4106786 Cca06g00173 06 4102521 4106786 ECH