Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01515 ATGAGGGAGGAAGAGATCGAGAAGCTTCGAGGAGTGGTGCGTGACTGCGTGAGCAAGCACCTCTACTCCTCCGCCATCTTCTTCGCCGACAAGGTCGCCGCCTTCACCGCGGACCCCGCCGACATCTACATGCAGGCGCAGGCGCTCTTCCTCGGCCGCCACTACCGCCGCGCCTTCCACCTCCTCAACGCCTCCAAAATCGTCCTCAGCGACCTCCGCTTCCGCTACCTCGCCGCCAAGTGCCTCGAGGAGTTGAAGGAGTGGGATCAGTGCCTGTCGATGCTGGGCGAGGCTAAAGTGGACGAGGATGGGAATGTTTCCGATACAAAGGACTCTAATGTCATGTACTTGGATAAAGATTGTGAAGATCGTGAAATCCATATATCTTCTGCAATATGCTTCTTAAGAGGCAAAGCATATGAAGCTCTAGAAAACCGTGCTCAGGCCAGACTATGGTATAAAGCTGCTATAAAAGCGGATCCTTTATGCTATGAGGCTTTGGAATGTCTTATTGAGAATCACATGCTTACGTGTGAGGAAGAAGCAAATTTGATCTCATCATTACAATTTGGTAGTGAGGACGGATGGTTATCTTCATTTTATTCTTGTTTGATAAAGAAGTATGACAAAGAAGATGTTGTAGAAGCCAAGTTCAGAGATCTCGAGAATGAAAGCTGTAAAAGTGACCAATCTGATCCTTCTTTCTTGCGGACACTGAAATCCAACACTGATCTATTGGCCTGTAAAGCTGAATACTACCATCAATGTGGTGAATATCAAAAGTGTTTTGACTTAACATATGTTTTGCTTGAGAAGGATCTTTTCCATCTAAAGTGTACATTAGTACATTTGGCAGCTGCTGTAGAGCTTGGACATTCAAATGAACTCTATCTGATGGCATGCAATTTGGTGAAGGATTATCCTCAGATGGCTTTATCATGGTTTGCTGTTGGTTGCTACTACTATTGTATCAAGAAGTATGATCAATCCCGCCGTTATTTTAGCAAGGCAACTAGTCTGGACAGAACATTTCCCCCTGCATGGATAGGCTATGGGAATGCTTATGCGGCTCAAGAAGAGGGTGATCAGGCTATGTCAGCTTACCGCACGGCAGCTAGATTGTTTCCTGGGTGCCATTTACCAACTCTTTACATTGGAATGGAATGCATGCGGACCCACAGCTATAAGCTTGCTGAGCAGTTTTTTATGCAGGCCAAGTCAACTTGCCCCTCAGATCCACTTGTGTATAATGAACTTGGAGTTGTTGCTTATCATATGAAAGAGTATAAGAAAGCGGTGTGGTGGTTTGAGAAAACATTAGCCTTGATACCATCTGCTTTATCTGAAATGTGGGAATCGACTGTAGTCAATCTTGCTCATGCATACAGAAAGCTGAAGATGTACCGAGAAGCAATTTCATATTATGAGAAAGCACTTACATTATCAACAAAAAGTGTGAGCACTTATGCTGGTCTTGCATATGCTTACCACTTACAGGATGATTTCACTACAGCAGTAGCATATTATCACAAAGCCTTGTGGCTGAAACCAGATGATCAGTTCTGCACAGAAATGTTAAGTTGGGCCCTAATAGATGAAAGCCGAAGGGGACTTGACCCTAGACTGATTTGA 1632 0.4461 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTADPADIYMQAQALFLGRHYRRAFHLLNASKIVLSDLRFRYLAAKCLEELKEWDQCLSMLGEAKVDEDGNVSDTKDSNVMYLDKDCEDREIHISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCEEEANLISSLQFGSEDGWLSSFYSCLIKKYDKEDVVEAKFRDLENESCKSDQSDPSFLRTLKSNTDLLACKAEYYHQCGEYQKCFDLTYVLLEKDLFHLKCTLVHLAAAVELGHSNELYLMACNLVKDYPQMALSWFAVGCYYYCIKKYDQSRRYFSKATSLDRTFPPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYKLAEQFFMQAKSTCPSDPLVYNELGVVAYHMKEYKKAVWWFEKTLALIPSALSEMWESTVVNLAHAYRKLKMYREAISYYEKALTLSTKSVSTYAGLAYAYHLQDDFTTAVAYYHKALWLKPDDQFCTEMLSWALIDESRRGLDPRLI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01515 543 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Cca04g01515 543 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Cca04g01515 543 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 6 533 - -
Cca04g01515 543 SUPERFAMILY TPR-like 41 173 IPR011990 GO:0005515
Cca04g01515 543 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Cca04g01515 543 SMART tpr_5 379 412 IPR019734 GO:0005515
Cca04g01515 543 SMART tpr_5 130 163 IPR019734 GO:0005515
Cca04g01515 543 SMART tpr_5 345 378 IPR019734 GO:0005515
Cca04g01515 543 SMART tpr_5 311 344 IPR019734 GO:0005515
Cca04g01515 543 SMART tpr_5 413 446 IPR019734 GO:0005515
Cca04g01515 543 SMART tpr_5 452 485 IPR019734 GO:0005515
Cca04g01515 543 SMART tpr_5 486 519 IPR019734 GO:0005515
Cca04g01515 543 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
Cca04g01515 543 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Cca04g01515 543 Pfam Tetratricopeptide repeat 488 519 IPR019734 GO:0005515
Cca04g01515 543 SUPERFAMILY HCP-like 313 520 - -
Cca04g01515 543 Pfam Tetratricopeptide repeat 319 377 - -
Cca04g01515 543 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Cca04g01515 543 Pfam Tetratricopeptide repeat 415 482 - -
Cca04g01515 543 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Cca04g01515 543 PANTHER CELL DIVISION CYCLE 16,23,27 6 533 - -
Cca04g01515 543 Gene3D Tetratricopeptide repeat domain 5 532 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01515 290 518 Glycosyltransferase AT3G04240 23.144 1.38e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01515 04 21624901 21656708 Cca04g01515 04 21624901 21656708 ECH