Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01502 ATGTCCAGCAAAGGAAAAGACATAGCAGAAGGATCATCGAGATcttcttctgctactactattactactatcaccactgctgctacAGCTGTTTCGAATCAACAACCTCTGAGTAGGTATGAATCTCAGAAGAGGAGGGATTGGAACACTTTTGGCCAATACTTGAGGAACCAAAGGCCTCCTGTGGCACTTTCACAGTGCAATTCCACCCAAGTGCTTGATTTCCTAAGGTACTTGGACCAGTTTGGGAAAACAAAAGTGCATGTTCAAGGTTGTCTCTTCTTTGGTCAAGTCGAGCCACCTGGTCCATGCACATGCCCTCTTAGACAAGCTTGGGGAAGCCTTGATGCTCTCATTGGAAGGCTAAGAGCTGCATATGAAGAAAATGGAGGCTTGCCTGAGACTAATCCTTTTGCTAGTGGCGCCATAAGAGTCTATCTTCGCGAGGTTCGTGATTCTCAAGCTAAGGCAAGAGGGATCCCTTATaagaagaaaaagaagaagaggaaTCTAATCAAGACCATAGGGGACAGCTCAAACTTACCTTTGCAGCAGTGA 558 0.4086 MSSKGKDIAEGSSRSSSATTITTITTAATAVSNQQPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSTQVLDFLRYLDQFGKTKVHVQGCLFFGQVEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGLPETNPFASGAIRVYLREVRDSQAKARGIPYKKKKKKRNLIKTIGDSSNLPLQQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01502 185 Pfam ALOG domain 32 152 IPR006936 -
Cca04g01502 185 PANTHER PROTEIN G1-LIKE2 2 184 IPR040222 -
Cca04g01502 185 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 2 184 - -
Cca04g01502 185 ProSiteProfiles ALOG domain profile. 39 166 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01502 Cca-Chr4 21397804 21400264 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01210 04 14215533 14218850 Cca04g01502 04 21397804 21400264 ECH
Cca10g00944 10 10922113 10926754 Cca04g01502 04 21397804 21400264 ECH
Cca04g01502 04 21397804 21400264 Cca09g01904 09 43908096 43913309 ECH
Cca04g01502 04 21397804 21400264 Cca04g01502 04 21397804 21400264 ECH
Cca04g01502 04 21397804 21400264 Cca10g00944 10 10922113 10926754 PCT