Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01494 ATGAGTTGTTGCTTTCAAATTTTCAGAAGGAAAGGATCTTCCTCAGCCACACTATTGACCGGAATTGATATAGATGTTTCAGAAATTCAGAATGTAAACATTTACACTTACAAGGATTTGCAAATTGCCACTGAAGGCTTTAGTCCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGCAGTCTATAAGGGAAAGCTGAAAAACGGTTCTCTGGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGGGTCCGGGAGTTCTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTGAAGTTGGAGGGATGCTGTGTGGAGAACAACCATAGAATTTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTATTGGTGCACGCCATAGTAGCATCCAATTCAGTTGGCATGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGGCTTGCATTCCTTCATGAGGAGGTTAGGCCACACATTATCCATAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGATCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTGACCCATATCAGTACCCGTGTTGCTGGAACAGCTGGTTATCTGGCACCTGAATATGCCATCCGAAATCAAGTGACTAGAAAATCAGATGTCTATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTCTACCTGTTGAAGAACAGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGAGTGGGGAGGCAGAAACATTGGTGGATGCTTTTCTGGATGGAGACTTCAACATTGAGGAGGCAGTGAGATTTTGTAAGGTTGGTCTCCTTTGCACACAGGATTCTCCTCAGCTGCGGCCCTCTATGTCCGCTGTGCTTGACATGCTTTTAGGCGAAAAAGATGTGAATAAGGAAAATGTGACAAAACCAGGCATGATATTTGAGTTTGTGGAAGCCAAAAGTGTGGGGAAACAAAAAAGCAAGGCTGAAGTGGATGGTACAACTTTGTTGGCTGAAGGGAAGCAAGAAGAGTCATCTTCATCAGGAACTGTTAGCTCTTTTGCTACCATGACCTTCACAGCAATTTATGATCGAAGCAACTAG 1170 0.4256 MSCCFQIFRRKGSSSATLLTGIDIDVSEIQNVNIYTYKDLQIATEGFSPANKIGQGGFGAVYKGKLKNGSLVAIKVLSAESKQGVREFLTEIKVISSIEHENLVKLEGCCVENNHRILVYGYLENNSLAQTLIGARHSSIQFSWHVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEEQYLLTRAWDLYESGEAETLVDAFLDGDFNIEEAVRFCKVGLLCTQDSPQLRPSMSAVLDMLLGEKDVNKENVTKPGMIFEFVEAKSVGKQKSKAEVDGTTLLAEGKQEESSSSGTVSSFATMTFTAIYDRSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01494 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Cca04g01494 389 CDD STKc_IRAK 53 318 - -
Cca04g01494 389 Gene3D Phosphorylase Kinase; domain 1 22 122 - -
Cca04g01494 389 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01494 389 PANTHER RECEPTOR-LIKE KINASE 1 375 - -
Cca04g01494 389 SUPERFAMILY Protein kinase-like (PK-like) 28 318 IPR011009 -
Cca04g01494 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Cca04g01494 389 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01494 389 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01494 389 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Cca04g01494 389 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01494 Cca-Chr4 20982709 20987090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01494 19 382 Receptor kinase-like Gene Family AT1G53430 48.787 5.30e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01494 Pkinase 9.1e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01494 04 20982709 20987090 Cca04g01494 04 20982709 20987090 ECH