Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01492 ATGCTTCACTCTAACTCACTTGTGAGAGCCATGTCCGTTTCATTTTCTCTCTCAACGCCCATTTCCAACACGGATTCACGCCTCCTCTTCACCAACATGGTGGATTGCACTTACCCTCCAACAACACTGCAAGTGTTTGCACTCTCCAAGTTAACCTTTGTTTGTTCCTCCCAAAGGGTTCTCCCCATTGAGGACCTGCTACTAAGTCCTGATGATTGGGACCCCTCAATTGTTAGTGTTGATTCTTCTGATTACTTTAACAATGGGAATGGGGAGGTTGGCCTTGGTGACTCTCTCAGTGAAGAGGTTCTCAAGGAGAGGATTAGGAGAATGAGAATTGGCATGGCAAACAAAGGAAAAGTGCCTTGGAACAAAGGAAGGAAGCACAGTGCAGAGACCAGGGAGCTAATCAGGCAAAGAACTTTAGAGGCCTTGAGGGACCCCAAGGTAAGGAAGAAGATGGCTGAACATCCTCATTCTCACAGTGATCAAACCAAGGCAAAGATAAGTGATTCACTGAGGCGTGTTTGGCATGAGCGGCTGAAGTTCAAGCGGATGGCGGAGCAACTTCTGTTTTCATGGGCACTAAGCATAGCAAATGCAGCCAAGAAAGGAGGGAGTGGTCAGGAAGAGCTAGATTGGGATAGCTACAATCAAATAAAACAGCAGATGGAGCTCCATCAACTTCTACAGGCTGAGGAAAAGGGAAAAGAAAAGCTGATGGCAGCTACTAAAGTAAAGAATATCATTCAGTCATGGAAGGAAAACATAGCCAAAGCAGCTAAGAAAGGAGGGAGTGGGGAGCAAGAACTTGACTGGGATAGTTACAAAAAGATACAAGAAGAAATGGTTCGCCTTCGTCAACTTCAGCGTACTAATGAAAAAGAAAAGGAAAAAGAGATGGCGAGGGCAAAAGCAGAGAAAGAAGCACAGATAAAGGCAATTAAAAGGGTAATCCTCACTCAAAAGAGAAAAGATCATCAAGAGAGGGCTAAGGTTAAAGGGAAAATAAAAAGTCATCCCTGCAGCAATGCAAAGGAAGGCAAAGATTCCTTGGAAGTTACTCAAGAGTTCAAACTTGCGACTAAATTAACTAAGATTCACATAAGTAAGAAAATCAACAGTGACGTAGCTAAAGGAGAAATTTTTAATTCCATTTTGCCAACCCTCCATAAATTGGATTTAGAGCTTATCAAGAGAGAGAAAATGCAAAAAGAAGCATCACTTGCAGATCAGATCCAAGCTGCTAGAGACAGAAAGGGCAAACTCCACTGA 1275 0.4329 MLHSNSLVRAMSVSFSLSTPISNTDSRLLFTNMVDCTYPPTTLQVFALSKLTFVCSSQRVLPIEDLLLSPDDWDPSIVSVDSSDYFNNGNGEVGLGDSLSEEVLKERIRRMRIGMANKGKVPWNKGRKHSAETRELIRQRTLEALRDPKVRKKMAEHPHSHSDQTKAKISDSLRRVWHERLKFKRMAEQLLFSWALSIANAAKKGGSGQEELDWDSYNQIKQQMELHQLLQAEEKGKEKLMAATKVKNIIQSWKENIAKAAKKGGSGEQELDWDSYKKIQEEMVRLRQLQRTNEKEKEKEMARAKAEKEAQIKAIKRVILTQKRKDHQERAKVKGKIKSHPCSNAKEGKDSLEVTQEFKLATKLTKIHISKKINSDVAKGEIFNSILPTLHKLDLELIKREKMQKEASLADQIQAARDRKGKLH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01492 424 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 248 424 - -
Cca04g01492 424 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 49 246 - -
Cca04g01492 424 MobiDBLite consensus disorder prediction 405 424 - -
Cca04g01492 424 SMART seet_6 157 173 IPR003611 GO:0003677
Cca04g01492 424 SMART seet_6 125 141 IPR003611 GO:0003677
Cca04g01492 424 MobiDBLite consensus disorder prediction 323 348 - -
Cca04g01492 424 Coils Coil 276 314 - -
Cca04g01492 424 Pfam NUMOD3 motif 160 174 IPR003611 GO:0003677
Cca04g01492 424 Pfam NUMOD3 motif 112 138 IPR003611 GO:0003677
Cca04g01492 424 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE PROTEIN 49 246 - -
Cca04g01492 424 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE PROTEIN 248 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01492 Cca-Chr4 20968817 20972126 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01492 04 20968817 20972126 Cca04g01492 04 20968817 20972126 ECH