Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01490 ATGGATCTGACAAAGAAGCGCAAAATCGACGAGAACGGCTTCAACGATTCCTCCGACCCTCTCAAACTCTCCCCCTCCGAGGCGCGCAAGCTCATCGACCGCTTCTCGCCGGACCAGCTACTCGATATTCTTCAGGAcgccgtctcccgccaccccgacgtcctcgccgccgtgcgcgccgccgccgaccccgacgTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCGCTCTTCTCCACCTTCGGCGACCTCGAGGAGGCCGTCGTCATCCTCGACAAGGCCACCGGCAAGTCCAAGGGCTACGGCTTCGTCACGTTCCGCCACGTCGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACGGTCACGCAGCTCGCCGCCGCCGGGAACTCCGCGTCGAATGCCAACGCCGCCGACGTCGCGCTCCGGAAGATCTACGTGGCCAACGTGCCGCCGGACCTCCCCGCGGACAAGCTTCTTGCGCACTTTTCGGTCTATGGCGAGATCGAGGAGGGGCCTTTAGGGTTCGATAAGCAAACGGGGAAGTCGAAGGGTTTCGCTTTGTTTGTTTACAAGACTCCCGAAGGGGCTCAGGCTGCGTTGCTGGAGCCTGTGAAGACTGTTGAGGGGAGGCAGTTGAGTTGTAAATTGGCCATTACTGATGGCAAGCAGGGGAAGCGGGCTGGGCCCGATGGGCCCCAGGCCCATGGGAATGTTCAGCatgggcatggggacggtgtgggggccggaatggggatgggcatggggatgCCGCCGAATGCCGGGTCTGGGCCTGGGCAGTATGGGCCTCCTGTGGGGGTGGGCTCTTATGGTGGGTTTGGTGGGCAGCCTCCCATGGGGAATCATCATCCCATGAATTCGTCGAATCCGGTGCCCGGGTCTATGGCGGGTGCTGGCGGTGGGTACGGTGGTGGAATGGGTGGGCCTTATGGTGGGTACGGTGGGCCGGGGTCGACGGGCTTTGGTGGGGCTGGTGGGATGGGAGGGGGTAGTGGAggtgtaggtgttggtgctggtggtggtgctggtggaggaattggtggtggtgctggtgctggtggtggGTCTTTGTATAGATTTCCGGGATCGGGTGGAATGCCTGGTGGTGGTGGAGGGTATCCGGATAGTGGAGGACACTATAGTTTATCAGCTTCGGGTGGGTACCAGAATCAACATCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCGCCGGGTTCCATGTATCCCAATGTGCCTCCTTACTACTGA 1329 0.5357 MDLTKKRKIDENGFNDSSDPLKLSPSEARKLIDRFSPDQLLDILQDAVSRHPDVLAAVRAAADPDVSQRKLFIRGLGWDTTTDGLRSLFSTFGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLEPVKTVEGRQLSCKLAITDGKQGKRAGPDGPQAHGNVQHGHGDGVGAGMGMGMGMPPNAGSGPGQYGPPVGVGSYGGFGGQPPMGNHHPMNSSNPVPGSMAGAGGGYGGGMGGPYGGYGGPGSTGFGGAGGMGGGSGGVGVGAGGGAGGGIGGGAGAGGGSLYRFPGSGGMPGGGGGYPDSGGHYSLSASGGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01490 442 MobiDBLite consensus disorder prediction 240 317 - -
Cca04g01490 442 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 405 - -
Cca04g01490 442 MobiDBLite consensus disorder prediction 394 442 - -
Cca04g01490 442 MobiDBLite consensus disorder prediction 407 421 - -
Cca04g01490 442 Gene3D - 45 149 IPR012677 -
Cca04g01490 442 MobiDBLite consensus disorder prediction 1 15 - -
Cca04g01490 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Cca04g01490 442 MobiDBLite consensus disorder prediction 423 442 - -
Cca04g01490 442 SUPERFAMILY RNA-binding domain, RBD 150 268 IPR035979 GO:0003676
Cca04g01490 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Cca04g01490 442 SUPERFAMILY RNA-binding domain, RBD 62 144 IPR035979 GO:0003676
Cca04g01490 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 231 IPR000504 GO:0003723
Cca04g01490 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Cca04g01490 442 SMART rrm1_1 70 142 IPR000504 GO:0003723
Cca04g01490 442 SMART rrm1_1 162 234 IPR000504 GO:0003723
Cca04g01490 442 PANTHER GEO13361P1-RELATED 1 405 - -
Cca04g01490 442 Gene3D - 150 274 IPR012677 -
Cca04g01490 442 CDD RRM_RBM24_RBM38_like 69 143 - -
Cca04g01490 442 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g01490 442 CDD RRM_RBM24_RBM38_like 161 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01490 Cca-Chr4 20959292 20965911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01490 157 236 C2H2 Transcription Factor Family AT2G19380 40.000 7.77e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01490 04 20959292 20965911 Cca04g01490 04 20959292 20965911 ECH