Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01486 ATGATCAACCCATCCATGCTCCGATCTCTCCGCTCCGCCGCCACCCGCGGCGCCTCCCACCTCTCCCGCCGTGGCTACGGCACCGAGCCCGTGCCGGAGCGCAAGGTGGCGGTTCTCGGCGCCGCCGGCGGGATCGGCCAACCCCTCTCCCTTCTCATGAAGCTCAACCCCCTCGTTTCCAGCCTCTCCCTCTACGATATCGCCGGAACCCCCGGCGTCGCCGCCGATGTCAGCCACATCAACACCAGATCTGAGGTTGTGGGGTACCAAGGTGAAGAAGAGCTTGGAAAAGCTTTGGAGGGTGCTGATGTTCCTGGAATGACTAGAGACGATCTTTTTAACATCAATGCTGGAATTGTCAAGACACTTTGTACTGCTATTTCTAAGTACTGCCCCCATGCCCTTGTTAACATGATTAGCAATCCTGTGAACTCCACTGTTCCAATTGCTGCTGAAGTTTTCAAGAAGGCTGGGACATATGATGAGAAGAAATTGTTTGGTGTTACCACCCTTGATGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAAGCCAATGTTCCAGTTGCTGGTGTCAATGTACCTGTTGTTGGTGGCCATGCTGGCATTACCATTTTGCCCCTATTTTCTCAAGCCACACCAAAAGCCAATCTTGATGACGATGTCATTACGGCTCTTACAAAGAGGACACAAGATGGTGGAACGGAAGTTGTGGAAGCTAAGGCTGGAAAGGGTTCGGCAACTTTGTCAATGGCCTATGCTGGAGCTCTTTTTGCTGATGCTTGTCTCAAGGGCCTCAATGGGGTCCCAGATGTTGTTGAGTGCTCATTCGTGCAATCCACTGTCACTGAACTTCCCTTCTTTGCTTCCAAGGTGAGGCTTGGGAAGAATGGTGTGGAGGAAGTTCTTGGCTTGGGACCTCTCTCAGATTTTGAGAAACAAGGCCTTGAAAGCCTTAAGCCTGAACTCAAATCATCCATTGAGAAGGGAATCAAATTTGCCAACCAGTAA 1008 0.5109 MINPSMLRSLRSAATRGASHLSRRGYGTEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVVGYQGEEELGKALEGADVPGMTRDDLFNINAGIVKTLCTAISKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVITALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEKQGLESLKPELKSSIEKGIKFANQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01486 335 SUPERFAMILY LDH C-terminal domain-like 168 334 IPR015955 GO:0003824|GO:0016616
Cca04g01486 335 PANTHER MALATE AND LACTATE DEHYDROGENASE 4 334 - -
Cca04g01486 335 CDD MDH_glyoxysomal_mitochondrial 35 333 IPR010097 GO:0006099|GO:0030060
Cca04g01486 335 Gene3D - 169 334 IPR015955 GO:0003824|GO:0016616
Cca04g01486 335 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 169 332 IPR022383 GO:0016616
Cca04g01486 335 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 35 334 IPR010097 GO:0006099|GO:0030060
Cca04g01486 335 Gene3D - 29 168 - -
Cca04g01486 335 ProSitePatterns Malate dehydrogenase active site signature. 168 180 IPR001252 GO:0006108|GO:0016615
Cca04g01486 335 Pfam lactate/malate dehydrogenase, NAD binding domain 35 167 IPR001236 GO:0016491
Cca04g01486 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 167 IPR036291 -
Cca04g01486 335 PIRSF Lac_mal_DH 30 334 IPR001557 GO:0016616|GO:0019752
Cca04g01486 335 PANTHER MALATE DEHYDROGENASE 4 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01486 Cca-Chr4 20891403 20895078 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01486 04 20891403 20895078 Cca04g01486 04 20891403 20895078 ECH