Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01210 ATGTCCAGCAGTGGCAGTCACGGGGCAGAAGGATCATCCAACACCAACATTCCAATAATCGATTATcaccatcagcagcagcagcagcaAACTAGTCCAGTGACACTTAGCCGCTACGAGTCCCAAAAGAGAAGGGACTGGAACACCTTTGGCCAATACCTTAAGAACCAGAGACCCCCAGTTCCTCTCTCTCAGTGCAATTGCAACCACGTCCTCGATTTCCTTCGCTACCTTGATCAGTTCGGAAAGACCAAGGTTCACCTCCAAGGGTGCATGTTCTATGGCCAACCTGAACCCCCTGCACCCTGCACCTGCCCTCTCAGGCAGGCTTGGGGGAGCCTCGACGCTCTCATAGGCAGACTCAGGGCTGCCTATGAGGAAAATGGAGGCTCCCCTGAGACTAACCCTTTTGCGAGTGGCTCCATTCGCGTATACCTTAGGGAGGTCAGGGAGTGCCAAGCTAAGGCTAGAGGTATCCCTTACAAGAAGAAAAAGAAGACCACAAAGGGAAATAATATTGAAGAATCATCAAACTCCTCCATCCACTTCTCTTGA 555 0.4883 MSSSGSHGAEGSSNTNIPIIDYHHQQQQQQTSPVTLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGSIRVYLREVRECQAKARGIPYKKKKKTTKGNNIEESSNSSIHFS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01210 184 ProSiteProfiles ALOG domain profile. 38 165 IPR006936 -
Cca04g01210 184 PANTHER DUF640 FAMILY PROTEIN 2 184 - -
Cca04g01210 184 MobiDBLite consensus disorder prediction 160 184 - -
Cca04g01210 184 Pfam ALOG domain 27 151 IPR006936 -
Cca04g01210 184 PANTHER PROTEIN G1-LIKE2 2 184 IPR040222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01210 Cca-Chr4 14215533 14218850 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01210 04 14215533 14218850 Cca04g01502 04 21397804 21400264 ECH
Cca04g01210 04 14215533 14218850 Cca04g01210 04 14215533 14218850 ECH
Cca04g01210 04 14215533 14218850 Cca09g01904 09 43908096 43913309 ECH