Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00474 ATGACAATGGAAGAAGAGTCCTTGGCAGCAGTCCCATTTGACAGAGCTGTTGAACAGgcaattgtatctatcaagaaaggtgcatatttgcttaagtgtggtcgtagaggaaagccaaagctctgtcctttcagactttctcagGATGAGAGAAATTTGATTTGGTATTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTGCAGTTACAAAAATTGTTCAAGGGCAGGAAAATATAAGGTCCCAGAGGCAAAATGAACACGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAACGGAGAACGTTCTCTTGATCTGATATGCAAGGACAAAGCGCAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCTCGGTGTCAACATCCCAGGGCTTTTAGTAGTTTAAGAAGCTGTAAAGGGGTGCAGAGTTGTGTTAGCAGTCCTGCTGGAATCTTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGATACCTCTCAGTTTACTCAGGTACATAGTGTATGTGCAAGTCCAACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGTACATCTGATAACTTTTATTCATCGGCATCTTTCCTCTCCAGCAGTCATGGCATAGCAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCAGATATTCACAGCAACATCGAGTCAACACGCGTTGATAAGGAGCGCAAGAAGAGTTTGTCCTATAGGTCACTGATGCATCCTACCTCCCCACATGTAGGGAAAAGCAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGGAAGTCTTGTAGGGATTGTGAATGAAAGATTTGTACAAACTGGAATTTATTCCTTAGTGCCAAAGTTACTAGAATCCACTGCCATGTTAGATGTACAGAACATAGCTTTAGGTGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCAAGGGAAGTGGGGAAGGCTGGGCCAGAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAATGGTATTCATGTAAAACATGTTTCCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACTTGGGGGAATGATGTTTGTTGTGCGGATTTGTTTAATGAAGGTAGAACTAGAAGTCAGTGGATACCACAAAAACTTGGTGGACCCTTAGATGGCATCAGTATCTCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCTAGCTGTGGGAGGTTATTTACATATGGAGATGGCACGTTTGGGATTCTCGGCCATGGTGATCTTCGCAGCTGTTCTAGTCCAAAAGAAGTTGAATCTCTTAGTGGCCTAAAGGTGAGGTCTGTTGCTTGTGGATCATGGCATACAGCTGCTATTGTTGAAGTCATGTTTGACCGTTTTCGGTACAACAGTGCTAGTGGTAAGCTATTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGACAATGGAAGCAAGCTTGTGCCAACATGTGTTACACAGCTTGTGGACTATGATTTTGTTCAGGTGTCATGTGGAAGAATGTTGACTGTAGCACTTACCAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAATATGGACAACTAGGAAATCAAAATGCTAGGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAGGAGTTTGTTAAAGTAATATCAGCTGGTTCGTATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTCTACACATGGGGCAAGGGTGAAAATGGCCAACTGGGGCTAGGTGACACTGAAGACAGATACACACCTTGTTTTGTTGAGGCTCTAAGAGACAGGAAGGTAGATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCAATTTCTATTAGTGATCAGTCAACTTGTAGTGGTTGTAGGTTGCCATTTGGCTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGCCTTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGATTATAAATGCACCTCTAGCCCCTAGTAAGAGCAAGGCTTTTCGGGTTTGCGATCAGTGCTTTGATAAACGGCAAGGAGGTACGCATTCGGTGATGGCATCAAAGTCTAGAAATTACAACACTCAGCAGACGCTGAAGCATCAGCAGAAAATTGGGGATGTGACTGAAGATAGGGGGGAGACAACTGTGACACAAGGTCCTTTGTTGTCTCTTGGTCAATCATGTTACAGGAAAAGCATGCCTAGTGGACGTAAGAATTGGAAAAACCAACAAGAAAGCCAGCAGGATGTAGAAGATAGTTCTTGTATGCTTGGTGGAATGCCACAGTGGGGGCAAGTTCCATGCCCTGACATGTTTAAGATCAATGGTGCAGAAAATTCAGTTGTGCCTGTTTCTTCATCCAAAAATAAACTAGCCACAGTTTCTCCCCTTAATGTGGAATCTACAGCATATAACTTCTCCCATGCAGAGGCAGATACAGCAAAGTCTGACAAGGTGCTCCTTGAAGAAGTTCAGAGGCTTAGAGCTGAGGCTAGGAGACTCGAAGAGCAGTGTGAGCTCAAGAACCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTGGCGAGAGAGGAAGCTGCTAAGTGCAAGGCAGCCAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGAAAAGATCACGCTGTACAGGAAGGAAAAGTTGGGCAGCATGAATTTGTTCCTAATGTGGCACCCATACATATAGATATGAAGAGTCCAAGAGATGGCAACATCGACAGTCTATCCAATTCCCCTATAGTATTTTCTGACACATTAAAATCAAAATTTGGGAGAAGTTTGTTCCCCAAAAATGATAAATTAATGGAGAATTCTAACTTAAATAGAGCGGATTCTCAACAAGACACCACTGAAGGCTTGAAGTCTGAATGGGTAGAGCAGTATGAACCTGGTGTTTACATCACATTCACAACCTTGCCATGTGGGAAAAAGGGCCTTAAGCGAGTGAGATTTAGCCGGAAGCGATTCTCAGAGAAAGAAGCTGAAAAATGGTGGGAAGAGAATCAAGGCACAGTGTATCACAAGTATGGGATTGAAGGATATATAAACACTAGCCAAAGTCAGGTGAAAGGCTAA 3225 0.4158 MTMEEESLAAVPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSAVTKIVQGQENIRSQRQNEHEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSCTSDNFYSSASFLSSSHGIADNSVPSSPYIDPDIHSNIESTRVDKERKKSLSYRSLMHPTSPHVGKSNVLKDVMIWGGGIGSLVGIVNERFVQTGIYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGIHVKHVSCGEYHTCALTDSGEVYTWGNDVCCADLFNEGRTRSQWIPQKLGGPLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGILGHGDLRSCSSPKEVESLSGLKVRSVACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHADNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNQNARDKAVMVEGQLKQEFVKVISAGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRYTPCFVEALRDRKVDTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSVMASKSRNYNTQQTLKHQQKIGDVTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKNWKNQQESQQDVEDSSCMLGGMPQWGQVPCPDMFKINGAENSVVPVSSSKNKLATVSPLNVESTAYNFSHAEADTAKSDKVLLEEVQRLRAEARRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDHAVQEGKVGQHEFVPNVAPIHIDMKSPRDGNIDSLSNSPIVFSDTLKSKFGRSLFPKNDKLMENSNLNRADSQQDTTEGLKSEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQGTVYHKYGIEGYINTSQSQVKG 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00474 1074 SUPERFAMILY PH domain-like 16 126 - -
Cca01g00474 1074 Gene3D - 16 133 IPR011993 -
Cca01g00474 1074 SMART fyve_4 646 715 IPR000306 GO:0046872
Cca01g00474 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Cca01g00474 1074 Gene3D - 388 653 IPR009091 -
Cca01g00474 1074 PANTHER F12P19.9 PROTEIN 16 1062 - -
Cca01g00474 1074 SUPERFAMILY FYVE/PHD zinc finger 653 727 IPR011011 -
Cca01g00474 1074 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Cca01g00474 1074 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Cca01g00474 1074 Pfam Transcription factor regulating root and shoot growth via Pin3 1004 1059 IPR013591 -
Cca01g00474 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Cca01g00474 1074 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Cca01g00474 1074 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Cca01g00474 1074 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Cca01g00474 1074 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Cca01g00474 1074 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Cca01g00474 1074 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Cca01g00474 1074 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Cca01g00474 1074 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Cca01g00474 1074 Gene3D - 252 387 IPR009091 -
Cca01g00474 1074 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Cca01g00474 1074 Coils Coil 853 887 - -
Cca01g00474 1074 ProSiteProfiles BRX domain profile. 1005 1060 IPR013591 -
Cca01g00474 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Cca01g00474 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Cca01g00474 1074 CDD PH_PLC_plant-like 15 127 - -
Cca01g00474 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 724 IPR013083 -
Cca01g00474 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Cca01g00474 1074 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1062 - -
Cca01g00474 1074 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Cca01g00474 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Cca01g00474 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Cca01g00474 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Cca01g00474 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Cca01g00474 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Cca01g00474 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Cca01g00474 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 322 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00474 Cca-Chr1 5889203 5899295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00474 1006 1064 Major Intrinsic Protein MIP AT1G31880 45.763 2.88e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00474 01 5889203 5899295 Cca01g00474 01 5889203 5899295 ECH